View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20219_low_4 (Length: 221)
Name: NF20219_low_4
Description: NF20219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20219_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 50493702 - 50493906
Alignment:
| Q |
1 |
atttagtgctactcccatcacttaaaatcttttatacatctgtaagtagaacgagaacttggatctgaatggattgcatttttattcacttttctttagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50493702 |
atttagtgctactcccatcacttaaaatcttttatatatctgtaagtagaacgagaacttggatctgaatggattgcatttttattcactcttctttagc |
50493801 |
T |
|
| Q |
101 |
tttctacttttgaattttaacattgtattatgtggtagacaaatttaaaactctttgttcatttccaaataacaacaccatagcagggaattcaacatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50493802 |
tttctacttttgaattttaacattgtattatgtggtagacaaatttaaaactctttgttcatttccaaataacaacaccatagcagggaattcaacatat |
50493901 |
T |
|
| Q |
201 |
gttgt |
205 |
Q |
| |
|
||||| |
|
|
| T |
50493902 |
gttgt |
50493906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University