View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2021_low_2 (Length: 335)
Name: NF2021_low_2
Description: NF2021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2021_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 53762930 - 53762603
Alignment:
| Q |
13 |
aatatcaagacttcattgcttcacgaagcttctcaagattccactggtctcttcgcttctcgccttcgtagtctcttcaatgaatagcaatcattctact |
112 |
Q |
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| T |
53762930 |
aatatcaagacttcattgcttcacgaagcttctcaagattccactggtctcttcgcttctcgccttcgtagtctcttcaatgaatagcaatcattctact |
53762831 |
T |
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| Q |
113 |
tcccgtgagtattttctctgctacatgatttctctgttcctccttttaaattgttgtcgt------------aaactagggttttgagacta-gtgctag |
199 |
Q |
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| T |
53762830 |
tcccgtgagtattttctatgctacatgatttctcagctcctccttttaaattgttgtcgtaactgataatggaaactagggttttgagactaggtgctag |
53762731 |
T |
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| Q |
200 |
gaatatagtgtagttttcttgttgaggatgcttgatgattgtacttcaaccgtgcgtgactgcaattcgtattcaatttgaatgtaattttccgtctgaa |
299 |
Q |
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| T |
53762730 |
gaatatagtgtagttttcttgttgaggatgtttgatgattgtacttcaaccgtgcgtgactgcaattcgtattcaatttgaatgtaattttccgtctgaa |
53762631 |
T |
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| Q |
300 |
ggaataaaggaagaccagaaacaagggt |
327 |
Q |
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| T |
53762630 |
ggaataaaggaagaacagaaacaagggt |
53762603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 18811023 - 18811134
Alignment:
| Q |
62 |
tcttcgcttctcgccttcgtagtctcttcaatgaatagcaatcattctacttcccgtgagtattttctctgctacatgatttctctgttcctccttttaa |
161 |
Q |
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| T |
18811023 |
tcttcgcttctcaccttcgtagtcacttcaatgaatagcaatgattgttcttcccgtgagttcgttctctgctacatgatttctctgttccaccttttaa |
18811122 |
T |
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| Q |
162 |
attgttgtcgta |
173 |
Q |
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| T |
18811123 |
attgttgtcgta |
18811134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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