View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20220_high_1 (Length: 600)
Name: NF20220_high_1
Description: NF20220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20220_high_1 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 82 - 587
Target Start/End: Complemental strand, 6371618 - 6371113
Alignment:
| Q |
82 |
acacaaaattgcatctttttgtttaatctttaatgctttcaggtggaatggcccgtagttgtatcacactcacaaaataattatttcatgaggtggaact |
181 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6371618 |
acacaaaattgcatctttttgtttaatctttaatactttcaggtggaatagcccgtagttgtatcacactcacaaaataattatttcatgaggtggaact |
6371519 |
T |
|
| Q |
182 |
acccaagctacaatttcacaatggcctctttttggacaccttttttggtaagatcnnnnnnntcagatttaaaaggtccaagttcaactggactattcaa |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6371518 |
acccaagctacaatttcacaatggcctctttttggacaccttttttggtaagatcaaaaaaatcagatttaaaaggtccaagttcaactggactattcaa |
6371419 |
T |
|
| Q |
282 |
tctttacatcgatgagccagatgaaaattggataactcaaattgaagattttgactttgttattctcaatggaggacattggtttgcaagatcaatggta |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6371418 |
tctttacatcgatgagccagatgaaaattggataactcaaattgaagattttgactttgttattctcaatggaggacattggtttgcaagatcaatggta |
6371319 |
T |
|
| Q |
382 |
ttctatgagaaacaaaaaattgttggatgtcattattgtctcttagaaaatgtccctgatttaaccatgtaccatggttatagaagagcatttaggactg |
481 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6371318 |
ttctatgagaaacaaaaaattgttggatgtcattattgtctcttagaaaatgtccctgatttaaccatgtaccatggttatagaagagcatttaggactg |
6371219 |
T |
|
| Q |
482 |
catttaaagccatcaataatttaaagaattttaagggcataacatttcttaggacactttcaccatcacattttgaaaatgggttatggaatcaaggtgg |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6371218 |
catttaaagccatcaataatttaaagaattttaagggcataacatttcttaggacactttcaccatcacattttgaaaatgggttatggaatcaaggtgg |
6371119 |
T |
|
| Q |
582 |
gaattg |
587 |
Q |
| |
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|||||| |
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| T |
6371118 |
gaattg |
6371113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 83 - 587
Target Start/End: Complemental strand, 6364976 - 6364472
Alignment:
| Q |
83 |
cacaaaattgcatctttttgtttaatctttaatgctttcaggtggaatggcccgtagttgtatcacactcacaaaataattatttcatgaggtggaacta |
182 |
Q |
| |
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||||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
6364976 |
cacaaaatttcatctttttgattaatctttattactttcaggtggaatggcccgtagttgtatcacactcacaaaatgattatttcatgaggtggcacta |
6364877 |
T |
|
| Q |
183 |
cccaagctacaatttcacaatggcctctttttggacaccttttttggtaagatcnnnnnnntcagatttaaaaggtccaagttcaactggactattcaat |
282 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||| ||| || |
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| T |
6364876 |
cccaacctacaatttcacaatggcctctttttggacaccccatttggtaagatcaaaagaatcagatttaaaaggtccaggttcaactggactcttcgat |
6364777 |
T |
|
| Q |
283 |
ctttacatcgatgagccagatgaaaattggataactcaaattgaagattttgactttgttattctcaatggaggacattggtttgcaagatcaatggtat |
382 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6364776 |
ctttacattgatgagccagatgaaaattggataactcaaattgaagattttaactatgttattctcaatggaggacattggtttacaagatcaatggtat |
6364677 |
T |
|
| Q |
383 |
tctatgagaaacaaaaaattgttggatgtcattattgtctcttagaaaatgtccctgatttaaccatgtaccatggttatagaagagcatttaggactgc |
482 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6364676 |
tctatgagaaacaaaaaattgttggatgtcattattgtctcttagaaaatgtccctgatttaaccatgtaccatggttatagaagagcatttaggactgc |
6364577 |
T |
|
| Q |
483 |
atttaaagccatcaataatttaaagaattttaagggcataacatttcttaggacactttcaccatcacattttgaaaatgggttatggaatcaaggtggg |
582 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6364576 |
atttaaagccataaataatttacagaattttaagggcataacatttcttaggacattttcaccctcacattttgaaaatgggttatggaatcaaggtggg |
6364477 |
T |
|
| Q |
583 |
aattg |
587 |
Q |
| |
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||||| |
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| T |
6364476 |
aattg |
6364472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 292; Significance: 1e-163; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 83 - 466
Target Start/End: Complemental strand, 2707 - 2324
Alignment:
| Q |
83 |
cacaaaattgcatctttttgtttaatctttaatgctttcaggtggaatggcccgtagttgtatcacactcacaaaataattatttcatgaggtggaacta |
182 |
Q |
| |
|
||||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
2707 |
cacaaaatttcatctttttgattaatctttattactttcaggtggaatggcccgtagttgtatcacactcacaaaatgattatttcatgaggtggcacta |
2608 |
T |
|
| Q |
183 |
cccaagctacaatttcacaatggcctctttttggacaccttttttggtaagatcnnnnnnntcagatttaaaaggtccaagttcaactggactattcaat |
282 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||| ||| || |
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| T |
2607 |
cccaacctacaatttcacaatggcctctttttggacaccccatttggtaagatcaaaagaatcagatttaaaaggtccaggttcaactggactcttcgat |
2508 |
T |
|
| Q |
283 |
ctttacatcgatgagccagatgaaaattggataactcaaattgaagattttgactttgttattctcaatggaggacattggtttgcaagatcaatggtat |
382 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2507 |
ctttacattgatgagccagatgaaaattggataactcaaattgaagattttaactatgttattctcaatggaggacattggtttacaagatcaatggtat |
2408 |
T |
|
| Q |
383 |
tctatgagaaacaaaaaattgttggatgtcattattgtctcttagaaaatgtccctgatttaaccatgtaccatggttatagaa |
466 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
2407 |
tctatgagaaacaaaaaattgttggatgtcattattgtctcttagaaaatgtccctgatttaaccatgtaccatggttatngaa |
2324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 301 - 587
Target Start/End: Complemental strand, 6554731 - 6554445
Alignment:
| Q |
301 |
gatgaaaattggataactcaaattgaagattttgactttgttattctcaatggaggacattggtt-tgcaagatcaatggtattctatgagaaacaaaaa |
399 |
Q |
| |
|
|||||||| |||| | | ||||||||||||||||||| ||| || ||||||||||||||||||| | |||| |||||||||||||||||||| |||| |
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| T |
6554731 |
gatgaaaaatggacatcacaaattgaagattttgactatgtcataatcaatggaggacattggttctacaagc-caatggtattctatgagaaaggaaaa |
6554633 |
T |
|
| Q |
400 |
attgttggatgtcattattgtctcttagaaaatgtccctgatttaaccatgtaccatggttatagaagagcatttaggactgcatttaaagccatcaata |
499 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| ||||||| ||| |||||||||||||||| |||| | |||| |
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| T |
6554632 |
attgttggatgtcattattgtctcttagaaaatgtcactgatttaacaatgtattatggctatagaaaagcttttaggactgcatttagagccttaaata |
6554533 |
T |
|
| Q |
500 |
atttaaagaattttaagggcataacatttcttaggacactttcaccatcacattttgaaaatgggttatggaatcaaggtgggaattg |
587 |
Q |
| |
|
||| | ||||||||||| | ||||||||||||||| || |||||||||||||||| ||||| ||||||| |||||||||||||| |
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|
| T |
6554532 |
gcttagaaaattttaagggtgtgacatttcttaggacatttgcaccatcacattttgagaatggtatatggaaccaaggtgggaattg |
6554445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 6554910 - 6554814
Alignment:
| Q |
122 |
aggtggaatggcccgtagttgtatcacactcacaaaataattatttcatgaggtggaactacccaagctacaatttcacaatggcctctttttggac |
218 |
Q |
| |
|
||||||||||||| ||| ||||||| || || || || | ||||||||||| ||||| |||||||| ||||||||||| ||||| ||| |||||| |
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|
| T |
6554910 |
aggtggaatggcctatagatgtatcatacacaaaagatgactatttcatgagatggaaatacccaagttacaatttcaccatggctgcttattggac |
6554814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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