View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20220_high_10 (Length: 268)
Name: NF20220_high_10
Description: NF20220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20220_high_10 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 15884999 - 15884766
Alignment:
| Q |
19 |
caattcttttgatgagattggtaagcacttcttctcttattggcttgaatgaactcacacgtttttgtgataaaagctccattgtgcatatttttcgtaa |
118 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15884999 |
caatccttttgatgagattggtaaacacttcttctcttattggatggaatgaactcacatgtttttgcgataaaagctccattgtgcatatttttcgtaa |
15884900 |
T |
|
| Q |
119 |
atgtctccaataatttccataaggtgcaaaaccaatatttgtgaatccatatgctagtatttccatggccaaaattttaggcctagaagcaaatattaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15884899 |
atgtctccaataatttccataaggtgaaaaaccaatatttgtgaatccatatgatagtatttcaatggccaaaattttaggcctagatgcaaatattaca |
15884800 |
T |
|
| Q |
219 |
tcatgggttttaagtacttccttagcatagtctg |
252 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
15884799 |
tcatgggttttaagtacctccttagcatagtctg |
15884766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 12611045 - 12611282
Alignment:
| Q |
15 |
gaatcaattcttttgatgagattggtaagcacttcttctcttattggcttgaatgaactcacacgtttttgtgataaaagctccattgtgcatatttttc |
114 |
Q |
| |
|
|||||||| |||| | ||||||| ||||| |||||||||||||||| | || ||||| ||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
12611045 |
gaatcaatcttttttacgagattgttaagctcttcttctcttattggttgaaacgaactaacacgcttttgtgtgaaaagctccattgtgcatatttttc |
12611144 |
T |
|
| Q |
115 |
gtaaatgtctccaataatttccataaggtgcaaaaccaatatttgtgaatccatatgctagtatttccatggccaaaattttaggcctagaagcaaatat |
214 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||| |||||| |||| | |||||| | |||||| || | | || |||||||||||| |||||||| |
|
|
| T |
12611145 |
gtagttgtctccaataatttccataaggtgaaaaagcaatatctgtgtaatcatatgacaatatttctatagttagaagtttaggcctagatgcaaatat |
12611244 |
T |
|
| Q |
215 |
tacatcatgggttttaagtacttccttagcatagtctg |
252 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
12611245 |
tacatcatgggttttaagtacctccctagcatactctg |
12611282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 12638045 - 12638282
Alignment:
| Q |
15 |
gaatcaattcttttgatgagattggtaagcacttcttctcttattggcttgaatgaactcacacgtttttgtgataaaagctccattgtgcatatttttc |
114 |
Q |
| |
|
|||||||| ||||||||||||||||| | | ||||||||||||| ||| ||||||||| ||||||||||| | | ||| || |||||||||||||||| |
|
|
| T |
12638045 |
gaatcaatacttttgatgagattggtgaactcttcttctcttataggccggaatgaactaacacgtttttgcgtaagaagttcaattgtgcatatttttc |
12638144 |
T |
|
| Q |
115 |
gtaaatgtctccaataatttccataaggtgcaaaaccaatatttgtgaatccatatgctagtatttccatggccaaaattttaggcctagaagcaaatat |
214 |
Q |
| |
|
||| || |||||||||||||||||||||| ||| |||||| |||| |||||||| |||||| || || || | |||||||||| |||| |||||||| |
|
|
| T |
12638145 |
gtagctgcctccaataatttccataaggtgaaaatgcaatatctgtggatccatataatagtatgtctattgcaacaattttaggcttagatgcaaatat |
12638244 |
T |
|
| Q |
215 |
tacatcatgggttttaagtacttccttagcatagtctg |
252 |
Q |
| |
|
| |||||| ||||| | ||| ||| ||||||| |||| |
|
|
| T |
12638245 |
gatatcatgagttttcattacctccctagcatactctg |
12638282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 63179 - 63415
Alignment:
| Q |
16 |
aatcaattcttttgatgagattggtaagcacttcttctcttattggcttgaatgaactcacacgtttttgtgataaaagctccattgtgcatatttttcg |
115 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||||||||||||| ||||||| | | ||| |||| | |||||||| ||||||||||||||||| |
|
|
| T |
63179 |
aatcaatccttttgatgagattggagagctcttcttctcttattggccggaatgaattgatacgactttgagtcaaaagctcaattgtgcatatttttcg |
63278 |
T |
|
| Q |
116 |
taaatgtctccaataatttccataaggtgcaaaaccaatatttgtgaatccatatgctagtatttccatggccaaaattttaggcctagaagcaaatatt |
215 |
Q |
| |
|
| || |||||||||||||||||||||| ||| ||||||| | |||||||||||| ||| ||||| | || | ||| ||||||||||| |||||| | |
|
|
| T |
63279 |
cagttgcctccaataatttccataaggtgaaaagccaatatctttgaatccatatgttagcatttctagagctacaatgttaggcctagatgcaaatttg |
63378 |
T |
|
| Q |
216 |
acatcatgggttttaagtacttccttagcatagtctg |
252 |
Q |
| |
|
|||||||||||||||| || ||| ||||||| |||| |
|
|
| T |
63379 |
acatcatgggttttaaatatctccctagcatactctg |
63415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 23033951 - 23034023
Alignment:
| Q |
89 |
taaaagctccattgtgcatatttttcgtaaatgtctccaataatttccataaggtgcaaaaccaatatttgtg |
161 |
Q |
| |
|
||||||||||| |||||| ||||||||||| |||||||||||||| ||||| || | |||| | ||||||||| |
|
|
| T |
23033951 |
taaaagctccaatgtgcagatttttcgtaactgtctccaataattaccatacggagaaaaagctatatttgtg |
23034023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 23025372 - 23025424
Alignment:
| Q |
90 |
aaaagctccattgtgcatatttttcgtaaatgtctccaataatttccataagg |
142 |
Q |
| |
|
|||||||||| |||||| ||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
23025372 |
aaaagctccaatgtgcaaatttttcttaactgtctccaataattaccataagg |
23025424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 23147020 - 23147080
Alignment:
| Q |
89 |
taaaagctccattgtgcatatttttcgtaaatgtctccaataatttccataaggtgcaaaa |
149 |
Q |
| |
|
||||||||||| |||||| ||||| |||| |||||||||||||| |||||||| |||||| |
|
|
| T |
23147020 |
taaaagctccagtgtgcagattttccgtagctgtctccaataattaccataaggagcaaaa |
23147080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 23040146 - 23040216
Alignment:
| Q |
90 |
aaaagctccattgtgcatatttttcgtaaatgtctccaataatttccataaggtgcaaaaccaatatttgt |
160 |
Q |
| |
|
|||||||||| |||||| ||||| |||| |||||||||||||| ||||| || |||||| | |||||||| |
|
|
| T |
23040146 |
aaaagctccaatgtgcaaattttccgtagctgtctccaataattaccatacggagcaaaagctatatttgt |
23040216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University