View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20220_high_11 (Length: 248)
Name: NF20220_high_11
Description: NF20220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20220_high_11 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 40142175 - 40141937
Alignment:
| Q |
11 |
taggctgatta-ctcatttacgaaaactacaagtttcagattgttatacataatacttacaagttatacaatcagctcagagttaattttgcaggaatta |
109 |
Q |
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| T |
40142175 |
taggctgattaactcatttaccaaaactacaagtttcagattgttatacataatacatacaagttatacaatcagctcagagttaaatttgcaggaatta |
40142076 |
T |
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| Q |
110 |
taaatcatctaaggtcgaacaaataaagctagaaactcaaaaagttgttgtcgcataaagccagctactatttaatttctatatgatactcagaaaattc |
209 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40142075 |
taaatcatctaaggttgaacaaataaagctagaaactcaaaaagttgttgtcacataaagccagctactatgtaatttctatatgatactcagaaaattc |
40141976 |
T |
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| Q |
210 |
atatctacggattatcccctgagatcaactaccttctgc |
248 |
Q |
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| T |
40141975 |
atatctacggattatcccctgagatcaactaccttctgc |
40141937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 32029271 - 32029034
Alignment:
| Q |
11 |
taggctgatta-ctcatttacgaaaactacaagtttcagattgttatacataatacttacaagttatacaatcagctcagagttaattttgcaggaatta |
109 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||| |
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| T |
32029271 |
taggctgattaactcatttacgaaaactacaagtttcagattgttatacataatacatatacattatacaatcagctcagagttaattttgcaggaatta |
32029172 |
T |
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| Q |
110 |
taaatcatctaaggtcgaacaaataaagctagaaactcaaaaagttgttgtcgcataaagccagctactatttaatttctatatgatactcagaaaattc |
209 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
32029171 |
taaatcatctaagcttgaacaaataaagctagaaactcaaaaagttgttgtcacataaagccagctactatgtaattt-tatatgatactcagaaaattc |
32029073 |
T |
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| Q |
210 |
atatctacggattatcccctgagatcaactaccttctgc |
248 |
Q |
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| T |
32029072 |
atatctacggattatcccctgagatcaactaccttctgc |
32029034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 9540251 - 9540477
Alignment:
| Q |
21 |
actcatttacgaaaactacaagtttcagattgttatacataatacttacaagttatacaatcagctcagagttaattttgcaggaattataaatcatcta |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9540251 |
actcatttacgaaaactacaagtttcagattgttatacataatacatataagttatacaatcagctcaaagttaattttgcaggaattataaatcatcta |
9540350 |
T |
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| Q |
121 |
aggtcgaacaaataaagctagaaactcaaaaagttgttgtcgcataaagccagctactatttaatttctatatgatactcagaaaattcatatctacgga |
220 |
Q |
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|| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
9540351 |
agcttgaacaaataaagctagaaactcaaaaagttgttgtcacataaagccagctactatgtaattt-tatatgatactcagaaaattcatatctacgga |
9540449 |
T |
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| Q |
221 |
ttatcccctgagatcaactaccttctgc |
248 |
Q |
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| T |
9540450 |
ttatcccttgagatcaactaccttctgc |
9540477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 38 - 248
Target Start/End: Original strand, 13858295 - 13858504
Alignment:
| Q |
38 |
acaagtttcagattgttatacataatacttacaagttatacaatcagctcagagttaattttgcaggaattataaatcatctaaggtcgaacaaataaag |
137 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13858295 |
acaagtttcagattgttatacataatacatacaagttatacaatcagctcagagttaattttgcaggaattataaatcatctaaggttgaacaaataaag |
13858394 |
T |
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| Q |
138 |
ctagaaactcaaaaagttgttgtcgcataaagccagctactatttaatttctatatgatactcagaaaattcatatctacggattatcccctgagatcaa |
237 |
Q |
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| T |
13858395 |
ctagaaactcaaaaagttgttgtcacataaagccagctactatgtaa-ttctatatgatactcagaaaattcatatctacggattatcccctgagatcaa |
13858493 |
T |
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| Q |
238 |
ctaccttctgc |
248 |
Q |
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| T |
13858494 |
ctaccttctgc |
13858504 |
T |
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