View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20220_high_3 (Length: 466)

Name: NF20220_high_3
Description: NF20220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20220_high_3
NF20220_high_3
[»] chr3 (1 HSPs)
chr3 (1-449)||(13858575-13859020)
[»] chr7 (5 HSPs)
chr7 (57-297)||(32028332-32028571)
chr7 (373-449)||(27859039-27859115)
chr7 (377-449)||(41475043-41475115)
chr7 (1-56)||(32028914-32028969)
chr7 (318-364)||(32028180-32028226)
[»] chr6 (3 HSPs)
chr6 (116-269)||(29088968-29089121)
chr6 (15-56)||(8635802-8635843)
chr6 (57-95)||(32671173-32671211)
[»] chr8 (3 HSPs)
chr8 (153-297)||(26052833-26052977)
chr8 (1-56)||(26053240-26053295)
chr8 (318-365)||(26052658-26052705)
[»] chr4 (6 HSPs)
chr4 (330-449)||(40141649-40141768)
chr4 (1-102)||(40141767-40141866)
chr4 (373-449)||(48812022-48812098)
chr4 (8-56)||(35258642-35258690)
chr4 (242-297)||(3924519-3924574)
chr4 (222-296)||(3908504-3908578)
[»] chr1 (1 HSPs)
chr1 (318-364)||(7363958-7364004)
[»] scaffold0240 (1 HSPs)
scaffold0240 (57-90)||(10546-10579)


Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 13858575 - 13859020
Alignment:
Q  1 tactaccaagaggaaagtatggcttatcacatgaaatcatatcaaaaccaagctactgcataataattctctgcactccacacacaacaacacatcatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||||||    
T  13858575 tactaccaagaggaaagtatggcttatcacatgaaatcatatcaaaaccaaactactgcataataattctctgcactccacacacaa---cacatcatag 13858671  T
Q  101 aggctatattaattgagacacaaaatagactagacctagaccaagctagaattgttatacatattatgaaccatctaagttttaagttgtgtatcattaa 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13858672 aggctatactaattgagacacaaaatagactagacctagaccaagctagaattgttatacatattatgaaccatctaagtttcaagttgtgtatcattaa 13858771  T
Q  201 tcaatgaagaagccaacatgtaattaaatcgtttaatgaaaccaaaacaaaagcatcttagtttaaataacaatttaaaaaacattcattattcatcgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13858772 tcaatgaagaagccaacatgtaattaaatcgtttaatgaaaccaaaacaaaagcatcttagtttaaataacaatttaaaaaacattcattattcatcgaa 13858871  T
Q  301 acctataaactcgattattcatgatgacaagtagcagctcaaactcactaagggccaagtttcaagttaacctcctccaaactttaccattcaatcaaga 400  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13858872 acctataaactcgattattcaagatgacaagtagcagctcaaactcactaagggccaagtttcaagttaacctcctccaaactttaccattcaatcaaga 13858971  T
Q  401 tgttactctactaacagtcaattacatcacaagatgttaccattcttct 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13858972 tgttactctactaacagtcaattacatcacaagatgttaccattcttct 13859020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 57 - 297
Target Start/End: Complemental strand, 32028571 - 32028332
Alignment:
Q  57 tgcataataattctctgcactccacacacaacaacacatcatagaggctatattaattgagacacaaaatagactagacctagaccaagctagaattgtt 156  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32028571 tgcataataactctctgcactccacacacaacaacacatcatagaggctatactaattgagacacaaaatagactagacctagaccaagctagaattgtt 32028472  T
Q  157 atacatattatgaaccatctaagttttaagttgtgtatcattaatcaatgaagaagccaacatgtaattaaatcgtttaatgaaaccaaaacaaaagcat 256  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||    
T  32028471 atacatattatgaaccatctaagtttcaagttgtgtatcattactcaatgaagaagccaacatgtaattgaatcgttcaatgaaaccaaaac-aaagcat 32028373  T
Q  257 cttagtttaaataacaatttaaaaaacattcattattcatc 297  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  32028372 cttagtttaaataacaattgaaaaaacattcattattcatc 32028332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 27859039 - 27859115
Alignment:
Q  373 tcctccaaactttaccattcaatcaagatgttactctactaacagtcaattacatcacaagatgttaccattcttct 449  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  27859039 tcctccaaactttaccattcaatcaagatgttactctaataacagtcaattacatctcaagatgttaccattcttct 27859115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 377 - 449
Target Start/End: Complemental strand, 41475115 - 41475043
Alignment:
Q  377 ccaaactttaccattcaatcaagatgttactctactaacagtcaattacatcacaagatgttaccattcttct 449  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  41475115 ccaaactttaccattcaatcaagatgttactctactaatggtcaattacatcacaagatgttaccattcttct 41475043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 32028969 - 32028914
Alignment:
Q  1 tactaccaagaggaaagtatggcttatcacatgaaatcatatcaaaaccaagctac 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32028969 tactaccaagaggaaagtatggcttatcacatgaaatcatatcaaaaccaagctac 32028914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 364
Target Start/End: Complemental strand, 32028226 - 32028180
Alignment:
Q  318 ttcatgatgacaagtagcagctcaaactcactaagggccaagtttca 364  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  32028226 ttcatgatgacaagtagcagctcaaactcactaagggccacgtttca 32028180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 116 - 269
Target Start/End: Complemental strand, 29089121 - 29088968
Alignment:
Q  116 agacacaaaatagactagacctagaccaagctagaattgttatacatattatgaaccatctaagttttaagttgtgtatcattaatcaatgaagaagcca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  29089121 agacacaaaatagactagacctagaccaagctagaattgttatacatattatgaaccatctaagtttcaagttgtgtatcattaatcaatgatgaagcca 29089022  T
Q  216 acatgtaattaaatcgtttaatgaaaccaaaacaaaagcatcttagtttaaata 269  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  29089021 acatgtaattaaatcgttctatgaaaccaaaacaaaagcatcttagtttaaata 29088968  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 8635843 - 8635802
Alignment:
Q  15 aagtatggcttatcacatgaaatcatatcaaaaccaagctac 56  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  8635843 aagtatggtttatcacatgaaatcatatcaaaaccaagctac 8635802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 32671173 - 32671211
Alignment:
Q  57 tgcataataattctctgcactccacacacaacaacacat 95  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  32671173 tgcataataactctctgcattccacacacaacaacacat 32671211  T

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Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 153 - 297
Target Start/End: Complemental strand, 26052977 - 26052833
Alignment:
Q  153 tgttatacatattatgaaccatctaagttttaagttgtgtatcattaatcaatgaagaagccaacatgtaattaaatcgtttaatgaaaccaaaacaaaa 252  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26052977 tgttatacatattatgaaccatccaagtttcaagttgtgtatcattaatcaatgaagaagccaacatgtaattaaatcgttcaatgaaaccaaaacaaaa 26052878  T
Q  253 gcatcttagtttaaataacaatttaaaaaacattcattattcatc 297  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  26052877 gcatcttagtttaaataacaattgaaaaaacattcattattcatc 26052833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26053295 - 26053240
Alignment:
Q  1 tactaccaagaggaaagtatggcttatcacatgaaatcatatcaaaaccaagctac 56  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26053295 tactgccaagaggtaagtatggcttatcacatgaaatcatatcaaaaccaagctac 26053240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 26052705 - 26052658
Alignment:
Q  318 ttcatgatgacaagtagcagctcaaactcactaagggccaagtttcaa 365  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  26052705 ttcatgatgacaagtagcagctcaaactcactaagggccacgtttcaa 26052658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 8e-59; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 330 - 449
Target Start/End: Complemental strand, 40141768 - 40141649
Alignment:
Q  330 agtagcagctcaaactcactaagggccaagtttcaagttaacctcctccaaactttaccattcaatcaagatgttactctactaacagtcaattacatca 429  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141768 agtagcagctcaaactcaccaagggccaagtttcaagttaacctcctccaaactttaccattcaatcaagatgttactctactaacagtcaattacatca 40141669  T
Q  430 caagatgttaccattcttct 449  Q
    ||||||||||||||||||||    
T  40141668 caagatgttaccattcttct 40141649  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 40141866 - 40141767
Alignment:
Q  1 tactaccaagaggaaagtatggcttatcacatgaaatcatatcaaaaccaagctactgcataataattctctgcactccacacacaacaacacatcatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  40141866 tactaccaagaggaaagtatggcttatcacatgaaatcatatcaaaaccaagctactgcataataattctctg--ctccacacacaacaacacatcatag 40141769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 373 - 449
Target Start/End: Complemental strand, 48812098 - 48812022
Alignment:
Q  373 tcctccaaactttaccattcaatcaagatgttactctactaacagtcaattacatcacaagatgttaccattcttct 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48812098 tcctccaaactttaccattcaatcaagatgttactctactaacagtcaattacatcacaagatgttaccattcttct 48812022  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 35258642 - 35258690
Alignment:
Q  8 aagaggaaagtatggcttatcacatgaaatcatatcaaaaccaagctac 56  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35258642 aagaggtaagtatggcttatcacatgaaatcatatcaaaaccaagctac 35258690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 3924574 - 3924519
Alignment:
Q  242 ccaaaacaaaagcatcttagtttaaataacaatttaaaaaacattcattattcatc 297  Q
    |||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||    
T  3924574 ccaaaacaaatgcatcttagtttaaatagcaattgaaataacattcattattcatc 3924519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 3908578 - 3908504
Alignment:
Q  222 aattaaatcgtttaatgaaaccaaaacaaaagcatcttagtttaaataacaatttaaaaaacattcattattcat 296  Q
    ||||||| | || ||| ||||||||||||| |||||||||||||| || ||||| ||| ||||||||||||||||    
T  3908578 aattaaaccattgaatcaaaccaaaacaaatgcatcttagtttaattagcaattgaaagaacattcattattcat 3908504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 7363958 - 7364004
Alignment:
Q  318 ttcatgatgacaagtagcagctcaaactcactaagggccaagtttca 364  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  7363958 ttcatgatgacaagtagcagctcaaactcactaagggccacgtttca 7364004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 10546 - 10579
Alignment:
Q  57 tgcataataattctctgcactccacacacaacaa 90  Q
    |||||||||| |||||||||||||||||||||||    
T  10546 tgcataataactctctgcactccacacacaacaa 10579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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