View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20220_high_5 (Length: 315)
Name: NF20220_high_5
Description: NF20220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20220_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 158 - 301
Target Start/End: Complemental strand, 1389505 - 1389362
Alignment:
| Q |
158 |
catacattttccaaaggctccaccgatttccaagacaacccatctgagtttaagctaagaatgacctcaccaacattatacaacaaaagggttgagttaa |
257 |
Q |
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| T |
1389505 |
catacattttccaaaggctccaccgatttccaagacaacccatctgagtttaagctaagaatgacctcaccaacattatacaacaaaagggttgagttaa |
1389406 |
T |
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| Q |
258 |
aaatggatggtttacgatccaaagatgtacctgggagagatttg |
301 |
Q |
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| T |
1389405 |
aaatggatggtttacgatccaaagatgtacctgggagagatttg |
1389362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 1389638 - 1389563
Alignment:
| Q |
14 |
caaagggtgccaattgccaaaccaatccagcatataccaaaacaatatccatatacaatttaacaatctaagccag |
89 |
Q |
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| T |
1389638 |
caaagggtgccaattgccaaaccaatccaacatataccaaaacaatatccatatacaatttaacaatctaagccag |
1389563 |
T |
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