View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20220_high_6 (Length: 295)
Name: NF20220_high_6
Description: NF20220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20220_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 38885537 - 38885790
Alignment:
| Q |
18 |
aagttctacaattctctccttctacattaattaggttgctccaatcccactcaactcttctatatatcaannnnnnnnaattatttctttccaacataaa |
117 |
Q |
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| T |
38885537 |
aagttctacaattctctccttctacattaattaggttgctccaatcccactcaactcttctatatatcaattttttttaattatttctttccaacataaa |
38885636 |
T |
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| Q |
118 |
acttgttttattcttgattcttgattttaatcttaactaaagctaccctttagtcagactaataaaggacaaaaatctacatttattcctcaacaagttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38885637 |
acttgttttattcttgattcttgattttaatcttaactaaagctaccctttagtcagactaataaaggacaaaaatctacatttattcctcaacaagttt |
38885736 |
T |
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| Q |
218 |
tcatacaaatatacaaagcaactacacaacttgagatccaagcaatcttatata |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38885737 |
tcatacaaatatacaaagcaactacacaacttgagatccaagcaatcttatata |
38885790 |
T |
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