View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20220_low_11 (Length: 288)
Name: NF20220_low_11
Description: NF20220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20220_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 4243490 - 4243746
Alignment:
| Q |
19 |
ggtaaaccctcggggatagcaacaacgacaatagtaacagcatcagcaataattccaataactgcattcatcacatcatcgaaactagtctttctaccgt |
118 |
Q |
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| T |
4243490 |
ggtaaaccctcggggatagcaacaacgacaatagtaacagcatcagcaataattccaataactgcattcatcacatcatcgaaactagtctttctaccgt |
4243589 |
T |
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| Q |
119 |
tgaactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttcc |
218 |
Q |
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| T |
4243590 |
tgaactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttcc |
4243689 |
T |
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| Q |
219 |
gattgaggatgtaagtttattcaaccttgtttgcaaaggggtttcttcgatgatgtc |
275 |
Q |
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| T |
4243690 |
gattgaggatgtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtc |
4243746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 6186549 - 6186790
Alignment:
| Q |
22 |
aaaccctcggggatagcaacaacgacaatagtaacagcatcagcaataattccaataactgcattcatcacatcatcgaaactagtctttctaccgttga |
121 |
Q |
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|||||||| || || |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |||| |
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| T |
6186549 |
aaaccctcaggaattgcaacaacaacaatagtaacagcatcagcaataattccaataattgcattcatcacatcatcaaaactcgtctttctaccattga |
6186648 |
T |
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| Q |
122 |
actctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttccgat |
221 |
Q |
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| T |
6186649 |
attctctaactccggcatcagtctttgtattcccggtgaaatatcgaaccaagagaacaaccaggactaaaaacgcgacaaccaaaccaacttttccgat |
6186748 |
T |
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| Q |
222 |
tgaggatgtaagtttattcaaccttgtttgcaaaggggtttc |
263 |
Q |
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|| ||||| || ||||||||||||||||||||||| ||||| |
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| T |
6186749 |
cgatgatgttagcttattcaaccttgtttgcaaaggtgtttc |
6186790 |
T |
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