View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20220_low_12 (Length: 268)
Name: NF20220_low_12
Description: NF20220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20220_low_12 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 42594346 - 42594079
Alignment:
| Q |
1 |
aaaaaggttgctaaacaaatcaacaagaaccnnnnnnngtaataatcggggaaaattgatagaccttaaaatcaacccaagcatctatggacaaggtgtg |
100 |
Q |
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| T |
42594346 |
aaaaaggttgctaaacaaatcaacaagaaccaaaaaaagtaataatcggggaaaattgatagaccttaaaatcaacccaagcatctatggacaaggtgtg |
42594247 |
T |
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| Q |
101 |
ttgatccttggtcaaaagaaagtcgtgatgaaatttgagggtttctatccatatcttatggacgcgaacaacttcatcggcaaaaggattcaaaaaatgg |
200 |
Q |
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| T |
42594246 |
ttgatccttggtcaaaagaaaatcgtgatgaaatttgagggtttctatccatatcttatggacgcgaacaacttcatcgacaaaaggattcaaaaaatgg |
42594147 |
T |
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| Q |
201 |
acgcctgtaggtagagtcttgaaatattttccgaatctttcaacaatatatactgtctgctccggcac |
268 |
Q |
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| T |
42594146 |
acgcctgtaggtagagtcttgaagtattttccgaatctctcaacaatatatactgtctgctccggcac |
42594079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 268
Target Start/End: Complemental strand, 42577520 - 42577393
Alignment:
| Q |
141 |
gtttctatccatatcttatggacgcgaacaacttcatcggcaaaaggattcaaaaaatggacgcctgtaggtagagtcttgaaatattttccgaatcttt |
240 |
Q |
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| T |
42577520 |
gtttctatccatagcttatggacgcaagcaattttatcaacaaaagggatcaaaaaatggacgccggtaggaagagttttaaagtactttccatatcgct |
42577421 |
T |
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| Q |
241 |
caacaatatatactgtctgctccggcac |
268 |
Q |
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| T |
42577420 |
caatgatatacactgtctgctccggcac |
42577393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 268
Target Start/End: Complemental strand, 42570314 - 42570204
Alignment:
| Q |
158 |
atggacgcgaacaacttcatcggcaaaaggattcaaaaaatggacgcctgtaggtagagtcttgaaatattttccgaatctttcaacaatatatactgtc |
257 |
Q |
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| T |
42570314 |
atggacgcgagcaattttatcaacaaaagggttcaaaaaatggatgccggtaggaagagatttaaagtattttccatatctctcgatgatatatactgtc |
42570215 |
T |
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| Q |
258 |
tgctccggcac |
268 |
Q |
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| T |
42570214 |
tgatccggcac |
42570204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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