View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20220_low_2 (Length: 509)
Name: NF20220_low_2
Description: NF20220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20220_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 137 - 495
Target Start/End: Complemental strand, 30574011 - 30573653
Alignment:
| Q |
137 |
aaaaaactcagtatgtgccctaaggcccgactaatccgaaaggtcaaatcccacatcgacttacggggacccttttaaagttagagcaaaactctatatg |
236 |
Q |
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| T |
30574011 |
aaaaaactcaatatctgacctaaggaccgactaatccgaaaggtcaaatcccacatcgacttgtggggacccttttaaagttagagcaaaactctatatg |
30573912 |
T |
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| Q |
237 |
gactatcccaccgaactgctgtggaaaatcacattaatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaa |
336 |
Q |
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| T |
30573911 |
gactatcccaccgaactgctgtggaaaatcacattaatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaa |
30573812 |
T |
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| Q |
337 |
atgtttatccaaacatatgcttaatggtttatcagtgtatttatatttggtttgtgagagagattaaaagaaatatcactactagtcatggttacattca |
436 |
Q |
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| T |
30573811 |
atgtttatccaaacatatgcttaatggtttatcagtgtatttatatttggtttgtgagagagattaaaagaaatatcattactagtcatggttacattca |
30573712 |
T |
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| Q |
437 |
tattataaaaagtttacccttaatattatcctcaacggatctcacaatgatatctgaaa |
495 |
Q |
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| T |
30573711 |
tattataaaaagtttacccataatattatcctcaacggatctcacaatgatatctgaaa |
30573653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 257 - 395
Target Start/End: Complemental strand, 30570415 - 30570277
Alignment:
| Q |
257 |
gtggaaaatcacattaatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgc |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30570415 |
gtggaaaatcacattaatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgc |
30570316 |
T |
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| Q |
357 |
ttaatggtttatcagtgtatttatatttggtttgtgaga |
395 |
Q |
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| T |
30570315 |
ttaatggtttattagtgtatttatatttggcttgtgaga |
30570277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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