View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20221_low_1 (Length: 383)
Name: NF20221_low_1
Description: NF20221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20221_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 32548900 - 32548540
Alignment:
| Q |
17 |
ataaattaataacatggtaggaaagttcccaactcttactttaatttgtgctgaaatcaaccctgtagtactaatgctaggttcttaaaatgtacccaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32548900 |
ataaattaataacatggtaggaaagttcccaactcttactttaatttgtgctgaaatcaaccctgtagtactaatgctaggttcttaaaatgtacccaag |
32548801 |
T |
|
| Q |
117 |
aaagtgaaatggttttgaaatactagaaagtcttgcaatggtttcagtccttcagttcaatcatcttttcactaccattgtagtcagcaaattgattttt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32548800 |
aaagtgaaatggttttgaaatactagaaagtcttgcaatggtttcagtccttcagttcaatcatcttttcactaccattgtagtcagcaaattgaatttt |
32548701 |
T |
|
| Q |
217 |
gaattgcaattgcgtgacacctaatgtcattaaaaatttatgcccttatcgatgggtctatttgtgattctcttggtttaaatcaaagtggttgtgcagt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32548700 |
gaattgcaattgcgtgacacctaatgtcattaaaaatttatgcccttatcgatgggtctatttgtgattctcttggtttaaatcaaagtggttgtgcagt |
32548601 |
T |
|
| Q |
317 |
aatttttggtgatgatatattgatattcagcatttcctgatgccaacaatttatctctgct |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32548600 |
aatttttggtgatgatatattgatattcagcatttcctgatgccaacaatttatctctgct |
32548540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University