View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20221_low_2 (Length: 295)

Name: NF20221_low_2
Description: NF20221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20221_low_2
NF20221_low_2
[»] chr5 (18 HSPs)
chr5 (1-280)||(30241325-30241604)
chr5 (8-280)||(30207412-30207684)
chr5 (1-280)||(29854194-29854473)
chr5 (28-280)||(30061282-30061534)
chr5 (28-280)||(30337469-30337721)
chr5 (28-281)||(29873084-29873337)
chr5 (28-280)||(30750556-30750808)
chr5 (47-280)||(30676232-30676465)
chr5 (1-281)||(30436696-30436976)
chr5 (1-280)||(30476258-30476537)
chr5 (48-232)||(30712420-30712604)
chr5 (44-280)||(17417537-17417773)
chr5 (48-281)||(30484331-30484564)
chr5 (27-278)||(30400983-30401234)
chr5 (40-280)||(30520569-30520809)
chr5 (40-280)||(30560909-30561149)
chr5 (40-243)||(30330190-30330393)
chr5 (115-232)||(17983895-17984012)
[»] chr3 (1 HSPs)
chr3 (1-279)||(25292892-25293170)
[»] chr1 (2 HSPs)
chr1 (40-280)||(7100343-7100583)
chr1 (40-279)||(7580664-7580903)
[»] chr7 (1 HSPs)
chr7 (28-281)||(26708242-26708495)
[»] chr4 (3 HSPs)
chr4 (28-281)||(20295525-20295778)
chr4 (1-179)||(52352842-52353020)
chr4 (156-280)||(13617637-13617761)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 30241604 - 30241325
Alignment:
Q  1 taaatcaaagccatcatacttcttttctgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaacttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30241604 taaatcaaagccatcatacttcttttctgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacacaaacccaaacttta 30241505  T
Q  101 gtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaagga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30241504 gtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaagga 30241405  T
Q  201 agtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttca 280  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  30241404 agtcggagtcctttgcttgggtgagaagaaactggataatcttctttttatcgtcttctcgtccaaacacttttggttca 30241325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 30207412 - 30207684
Alignment:
Q  8 aagccatcatacttcttttctgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaa 107  Q
    ||||| |||||||||| |  ||||||| ||| ||||||||| ||||||||||| ||||| |||||| |||| |||||| ||||||| | ||| |||||||    
T  30207412 aagccgtcatacttctctcttgtgatagattctataatggagcacaaaatcctcttgaccgagaaagtctcggaaacacaaacccatatttttgtattaa 30207511  T
Q  108 aattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcgga 207  Q
    |||||||||||||  || |||||||||||||| |||||| |||||| |||||||||| ||||||||| |||| || |||||||| |||||||||||||||    
T  30207512 aattgctactcaccctagcatcattgtagaccaattgaacaagagttgtttttccaacaccacctaaaccaacaatgggatagacggaaaggaagtcgga 30207611  T
Q  208 gtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttca 280  Q
    |||| | ||||||||||||||||||  ||||||||||| |||||| |||||||| ||||| ||||||||||||    
T  30207612 gtccctcgcttgggtgagaagaaactcgataatcttctctttatcatcttctcgcccaaatacttttggttca 30207684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 29854194 - 29854473
Alignment:
Q  1 taaatcaaagccatcatacttcttttctgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaacttta 100  Q
    |||||||||| || || |||||| |  ||||||| ||| || ||| ||||||||||| || ||||| |||||| | ||||||||  ||||||||| |||     
T  29854194 taaatcaaagtcagcagacttctctcttgtgatagattctacaatagaacacaaaattctcttgactgagaaagtttcagaaacgcaaacccaaattttt 29854293  T
Q  101 gtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaagga 200  Q
     ||| |||||||| ||||||  ||||||||||||||||| ||||||||||||| |||||||||| ||||||||| ||||||| |||||||| ||||||||    
T  29854294 ttatcaaaattgccactcaccctaacatcattgtagaccaattgaagaagagttgtttttccaacaccacctaaaccaaaaatgggatagacggaaagga 29854393  T
Q  201 agtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttca 280  Q
    |||| |||||| | | ||||||||||||||||   | |||||| | |||||| |||||||||||||||||||||||||||    
T  29854394 agtctgagtccctcgtttgggtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaacacttttggttca 29854473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 28 - 280
Target Start/End: Original strand, 30061282 - 30061534
Alignment:
Q  28 tgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaaca 127  Q
    ||||||| ||| |||||| |||||||||||||| || || |||||| ||||||||||| ||||||||| |||  | | |||||||| ||||||  |||||    
T  30061282 tgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaatttttttttcaaaattgccactcaccctaaca 30061381  T
Q  128 tcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaa 227  Q
    |||||||||||| |||||| |||||| |||||||||| ||||||||| ||||  | |||||||| |||||||||||| |||||| |||||||||||||||    
T  30061382 tcattgtagaccaattgaacaagagttgtttttccaacaccacctaaaccaactatgggatagacggaaaggaagtcagagtcccttgcttgggtgagaa 30061481  T
Q  228 gaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttca 280  Q
    |||||   | |||||| | ||||||  ||||||||||||||||||||||||||    
T  30061482 gaaactcaacaatcttttctttatcaacttctcgtccaaacacttttggttca 30061534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 28 - 280
Target Start/End: Complemental strand, 30337721 - 30337469
Alignment:
Q  28 tgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaaca 127  Q
    ||||||| ||| |||||| |||||||||||||| || || |||||| ||||||||||| ||||||||| |||  | | |||||||| ||||||  |||||    
T  30337721 tgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaatttttttttcaaaattgccactcaccctaaca 30337622  T
Q  128 tcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaa 227  Q
    |||||||||||| |||||| |||||| |||||||||| ||||||||| ||||  | |||||||| |||||||||||| |||||||| |||||||||||||    
T  30337621 tcattgtagaccaattgaacaagagttgtttttccaacaccacctaaaccaactatgggatagacggaaaggaagtcagagtccttcgcttgggtgagaa 30337522  T
Q  228 gaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttca 280  Q
    |||||   | |||||| | ||||||  ||||||||||||||||||||||||||    
T  30337521 gaaactcaacaatcttttctttatcaacttctcgtccaaacacttttggttca 30337469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 28 - 281
Target Start/End: Original strand, 29873084 - 29873337
Alignment:
Q  28 tgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaaca 127  Q
    ||||||| ||| ||||||||||||  ||||||| |||||||||||| ||||||||||| |||||||||  ||  | | |||||||| ||||||  |||||    
T  29873084 tgtgatagattctataatggaacaacaaatcctcttgacagagaaagtctcagaaacacaaacccaaatatttttgtcaaaattgccactcaccctaaca 29873183  T
Q  128 tcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaa 227  Q
    |||||||||||| ||||||  ||||| |||||||||| ||||||||| |||| || |||||||| |||||||||||| |||||| | |||||||||||||    
T  29873184 tcattgtagaccaattgaacgagagttgtttttccaataccacctaaaccaacaatgggatagacggaaaggaagtcagagtccctcgcttgggtgagaa 29873283  T
Q  228 gaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttcaa 281  Q
    |||||   | |||||| | |||||| |||||||||||||| |||||||||||||    
T  29873284 gaaactcaacaatcttttctttatcatcttctcgtccaaatacttttggttcaa 29873337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 28 - 280
Target Start/End: Original strand, 30750556 - 30750808
Alignment:
Q  28 tgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaaca 127  Q
    ||||||| ||| |||||| |||||||||||||| || || |||||| ||||||||||| ||||||||| |||  | | |||||||  ||||||  |||||    
T  30750556 tgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaatttttttttcaaaattgtcactcaccctaaca 30750655  T
Q  128 tcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaa 227  Q
    |||||||||||| |||||| |||||| |||||||||| ||||||||| ||||  | |||||||| |||||||||||| |||||| |||||||||||||||    
T  30750656 tcattgtagaccaattgaacaagagttgtttttccaacaccacctaaaccaactatgggatagacggaaaggaagtcagagtcccttgcttgggtgagaa 30750755  T
Q  228 gaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttca 280  Q
    |||||     |||||| | ||||||  ||||||||||||||||||||||||||    
T  30750756 gaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttca 30750808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 47 - 280
Target Start/End: Complemental strand, 30676465 - 30676232
Alignment:
Q  47 gaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaa 146  Q
    |||||||||||||| ||||| |||||| ||||||||||| |||||||||||||  ||| ||||| || ||||||  ||||||||||| ||| | ||||||    
T  30676465 gaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaacttttttatcaaaatggccactcaccctaacatcattgaagatcaattgaa 30676366  T
Q  147 gaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctt 246  Q
     |||||| |||||||||| ||||||||| ||||||| ||||||||  |||| |||||| |||||||| || |||||||||||||||  || |||||| |     
T  30676365 caagagttgtttttccaataccacctaaaccaaaaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttc 30676266  T
Q  247 tttatcgtcttctcgtccaaacacttttggttca 280  Q
    || |||  ||||||||||||||||||||| ||||    
T  30676265 ttgatcaacttctcgtccaaacacttttgattca 30676232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 30436696 - 30436976
Alignment:
Q  1 taaatcaaagccatcatacttcttttctgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaacttta 100  Q
    |||||||||| || || |||||| |  ||||||| ||| |||||| |||||||||||||| ||||| |||||| ||||||||||| ||||||||| |||     
T  30436696 taaatcaaagtcagcacacttctctcttgtgatagattctataatagaacacaaaatccttttgaccgagaaagtctcagaaacacaaacccaaattttt 30436795  T
Q  101 gtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaagga 200  Q
     ||| |||||||| ||||||  ||||||||||||||| | |||||| |||||| |||||||||| ||||||||| |||| |||||||||||  ||||  |    
T  30436796 ttatcaaaattgcgactcaccctaacatcattgtagatcaattgaacaagagttgtttttccaataccacctaaaccaacaacgggatagacagaaataa 30436895  T
Q  201 agtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttcaa 281  Q
    |||| |||||||| ||  |||| |||||||||  || |||||| | |||||| || |||| ||| |||||||||| |||||    
T  30436896 agtcagagtccttcgcaagggtaagaagaaactggacaatcttttctttatcatcgtctcttcctaacacttttgtttcaa 30436976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 30476258 - 30476537
Alignment:
Q  1 taaatcaaagccatcatacttcttttctgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaacttta 100  Q
    |||||| ||| ||||| |||| | || ||||||| ||| ||||||||||||||||||||| |||||||||||| |||| |||||| ||| |||||||||     
T  30476258 taaatccaaggcatcaaacttgtcttttgtgatagattctataatggaacacaaaatccttttgacagagaaagtctccgaaacacaaatccaaactttt 30476357  T
Q  101 gtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaagga 200  Q
    ||||||||||||||||| ||  ||  |||||||||||||  ||||  ||| || ||||| |||| ||||||||  |||| ||  ||||||||||| ||||    
T  30476358 gtattaaaattgctacttaccctatgatcattgtagaccatttgagcaagtgttgttttaccaacaccacctaggccaacaataggatagatggatagga 30476457  T
Q  201 agtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttca 280  Q
    |||| ||  | |  ||||||||||||||||||  || |||| ||| | |||| ||| |||||||||||||||| ||||||    
T  30476458 agtcagatacttgcgcttgggtgagaagaaactcgacaatcctctctctatcatctactcgtccaaacactttgggttca 30476537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 30712604 - 30712420
Alignment:
Q  48 aacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaag 147  Q
    ||||||||||||| ||||| |||||| ||||||||||| ||||||||| |||  ||| |||||||| ||||||  ||||||||||||||| | ||||||     
T  30712604 aacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaaattttttatcaaaattgcgactcaccctaacatcattgtagatcaattgaac 30712505  T
Q  148 aagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaac 232  Q
    |||||| |||||||||| ||||||||| |||| || ||||||||  |||| |||||| |||||||| || |||||||||||||||    
T  30712504 aagagttgtttttccaataccacctaaaccaacaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaagaaac 30712420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 44 - 280
Target Start/End: Complemental strand, 17417773 - 17417537
Alignment:
Q  44 atggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgatt 143  Q
    ||||||||||||||||| ||||  ||||||   ||||||||| ||| ||||| ||| ||||||||||||||||||||  ||||||||||||||||| |||    
T  17417773 atggaacacaaaatcctcttgattgagaaagcatcagaaacacaaatccaaatttttgtattaaaattgctactcaccctaacatcattgtagaccaatt 17417674  T
Q  144 gaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatctt 243  Q
    ||   ||||| ||||| |||| ||||||||||||||  | ||||||||  |||||||  ||  | ||| ||||||||||||| ||||||   | ||||||    
T  17417673 gagctagagttgttttaccaataccacctaacccaactatgggatagactgaaaggatttcacaatcccttgcttgggtgagcagaaactcaacaatctt 17417574  T
Q  244 ctttttatcgtcttctcgtccaaacacttttggttca 280  Q
    |||| |||| ||||| ||||||||||| |||||||||    
T  17417573 ctttgtatcatcttcccgtccaaacacctttggttca 17417537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 281
Target Start/End: Original strand, 30484331 - 30484564
Alignment:
Q  48 aacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaacatcattgtagaccgattgaag 147  Q
    ||||||||||||| ||||| |||||| ||||||||||| ||||||||| |||  ||| |||||||| ||||||  ||||||||||||||| | ||||||     
T  30484331 aacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaatttttttatcaaaattgcgactcaccctaacatcattgtagatcaattgaac 30484430  T
Q  148 aagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttcttt 247  Q
    |||||| |||||||||| ||||||||| |||| || ||||||||  |||| |||||  |||||||| || | |||||||||||||  || |||||| | |    
T  30484431 aagagttgtttttccaataccacctaaaccaacaatgggatagacagaaatgaagttagagtccttcgcataggtgagaagaaactcgacaatcttttct 30484530  T
Q  248 ttatcgtcttctcgtccaaacacttttggttcaa 281  Q
    ||||| || |||| ||| ||  |||||| |||||    
T  30484531 ttatcatcgtctcttcctaatgcttttgattcaa 30484564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 278
Target Start/End: Original strand, 30400983 - 30401234
Alignment:
Q  27 ctgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaac 126  Q
    |||| ||| ||| |||||| |||||||||||||| |||||||||||| |||| |||||| ||||||||  | |  | | ||||| |   |||||  ||||    
T  30400983 ctgtaatatattctataatagaacacaaaatcctcttgacagagaaagtctcggaaacacaaacccaagatcttatgtcaaaatagtccctcaccctaac 30401082  T
Q  127 atcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgaga 226  Q
    ||||||||||||| |||||| |||||| ||||| |||| ||||||||| |||| || ||| |||| |||||||||||| |||||| | || |||||||||    
T  30401083 atcattgtagaccaattgaacaagagttgttttaccaataccacctaaaccaacaatggggtagacggaaaggaagtcagagtccctcgcatgggtgaga 30401182  T
Q  227 agaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggtt 278  Q
    ||||||   | |||||| | |||||| |||| |||||||||||||| |||||    
T  30401183 agaaactcaaaaatcttttctttatcatcttttcgtccaaacacttctggtt 30401234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 40 - 280
Target Start/End: Complemental strand, 30520809 - 30520569
Alignment:
Q  40 tataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaacatcattgtagacc 139  Q
    |||||| | |||||||||  |||| |||||||||  |||||||||| ||||||||| ||| |||| |||||||  ||||||      |||||| || ||     
T  30520809 tataatagtacacaaaattttgttaacagagaaagcctcagaaacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaact 30520710  T
Q  140 gattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataa 239  Q
     |||||  |||||| ||||| |||| ||||||||| |||| ||  |||||||||||||||| ||| ||| |||||||||||||||||||||||  || ||    
T  30520709 aattgagcaagagttgttttcccaataccacctaagccaacaattggatagatggaaaggaggtcagagccctttgcttgggtgagaagaaactcgacaa 30520610  T
Q  240 tcttctttttatcgtcttctcgtccaaacacttttggttca 280  Q
    |||||| |||||| |||||||| ||| | ||||||||||||    
T  30520609 tcttctctttatcatcttctcgaccatatacttttggttca 30520569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 40 - 280
Target Start/End: Complemental strand, 30561149 - 30560909
Alignment:
Q  40 tataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaacatcattgtagacc 139  Q
    |||||| | |||||||||  |||| |||||||||  |||||||||| ||||||||| ||| |||| |||||||  ||||||      |||||| || ||     
T  30561149 tataatagtacacaaaattttgttaacagagaaagcctcagaaacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaact 30561050  T
Q  140 gattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataa 239  Q
     |||||  |||||| ||||| |||| ||||||||| |||| ||  |||||||||||||||| ||| ||| |||||||||||||||||||||||  || ||    
T  30561049 aattgagcaagagttgttttcccaataccacctaagccaacaattggatagatggaaaggaggtcagagccctttgcttgggtgagaagaaactcgacaa 30560950  T
Q  240 tcttctttttatcgtcttctcgtccaaacacttttggttca 280  Q
    |||||| |||||| |||||||| ||| | ||||||||||||    
T  30560949 tcttctctttatcatcttctcgaccatatacttttggttca 30560909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 30330393 - 30330190
Alignment:
Q  40 tataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaacatcattgtagacc 139  Q
    |||||| ||||||| |||||| |||| ||||||| ||||| | ||| ||||||||| | |  |||||||||| | ||||||  ||| ||||| || || |    
T  30330393 tataatagaacacacaatcctattgagagagaaagtctcatatacacaaacccaaattattatattaaaatttccactcaccctaatatcatcgtggatc 30330294  T
Q  140 gattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataa 239  Q
     || ||| || ||| |||||||||| ||| ||||| ||||  | ||||||||||||||||||||| | |||| | |||||||||||||||||| ||| ||    
T  30330293 aatcgaacaatagttgtttttccaatacctcctaaaccaactatgggatagatggaaaggaagtcagtgtccctcgcttgggtgagaagaaacttgacaa 30330194  T
Q  240 tctt 243  Q
    ||||    
T  30330193 tctt 30330190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 17983895 - 17984012
Alignment:
Q  115 actcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtccttt 214  Q
    ||||||| || |||| ||||||||| |||||  |||||| |||||||||| |||||||||||||| || |||||||| |||||||||||| |||  | |     
T  17983895 actcacgttatcatcgttgtagaccaattgagcaagagttgtttttccaacaccacctaacccaacaatgggatagacggaaaggaagtcagagaacctc 17983994  T
Q  215 gcttgggtgagaagaaac 232  Q
    ||||||||||||||||||    
T  17983995 gcttgggtgagaagaaac 17984012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 25293170 - 25292892
Alignment:
Q  1 taaatcaaagccatcatacttcttttctgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaacttta 100  Q
    |||||||||| ||||| |||||| |   |||||| ||| ||||||||||||||||||||| ||||| |||||| ||||||||||| ||||||||| |||     
T  25293170 taaatcaaaggcatcacacttctctctagtgatagattctataatggaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaattttt 25293071  T
Q  101 gtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaagga 200  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||||| |||||| |||||||||| ||||||||| |||| || ||||| || ||||||||    
T  25293070 gtattaaaagtgctactcaccctaacatcattgtagaccaattgaacaagagttgtttttccaacaccacctaaaccaacaatgggatggacggaaagga 25292971  T
Q  201 agtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttc 279  Q
    |||| |||||| |||||||||| |||||||||  || | |||||| |||||| |||||||||||||| |||||||||||    
T  25292970 agtcagagtcccttgcttgggtaagaagaaactcgacagtcttctctttatcatcttctcgtccaaatacttttggttc 25292892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 40 - 280
Target Start/End: Original strand, 7100343 - 7100583
Alignment:
Q  40 tataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaacatcattgtagacc 139  Q
    ||||||||||||||||||||  ||||| ||||||  ||| |||||| ||||||||| ||| || || ||||||  ||||||  || |||||||||| |||    
T  7100343 tataatggaacacaaaatccccttgactgagaaaacctctgaaacacaaacccaaatttttgttttgaaattgtcactcaccctatcatcattgtaaacc 7100442  T
Q  140 gattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataa 239  Q
     |||||  |||||| |||||||||| ||||||||| || | || |||||||| ||| |||||||| |||||||||||||||||||||||||||   | ||    
T  7100443 aattgagaaagagttgtttttccaacaccacctaaaccgacaatgggatagacggataggaagtcagagtcctttgcttgggtgagaagaaactcaacaa 7100542  T
Q  240 tcttctttttatcgtcttctcgtccaaacacttttggttca 280  Q
    |||||| |||||| ||||||||||||||||  |||||||||    
T  7100543 tcttctctttatcatcttctcgtccaaacatctttggttca 7100583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 40 - 279
Target Start/End: Complemental strand, 7580903 - 7580664
Alignment:
Q  40 tataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaacatcattgtagacc 139  Q
    ||||||||||||||||||||  ||||| |||||   ||| |||||| ||||||||| ||| || || ||||||  ||||||  || |||| |||||||||    
T  7580903 tataatggaacacaaaatccccttgaccgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagacc 7580804  T
Q  140 gattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataa 239  Q
     |||||  |||||| |||||||||| ||||||||| |||| ||  ||||||| |||||||||||| |||||| | ||||||||||||||||||   | ||    
T  7580803 aattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaa 7580704  T
Q  240 tcttctttttatcgtcttctcgtccaaacacttttggttc 279  Q
    || ||| |||||| ||||||||||||||||| ||||||||    
T  7580703 tcctctctttatcatcttctcgtccaaacacctttggttc 7580664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 28 - 281
Target Start/End: Original strand, 26708242 - 26708495
Alignment:
Q  28 tgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaaca 127  Q
    ||||||| ||| |||||| |||||||||||||| ||||| |||||| ||||||||||| ||||||||| |||  ||| |||||||  ||||||  |||||    
T  26708242 tgtgatagattctataatagaacacaaaatcctcttgactgagaaagtctcagaaacacaaacccaaatttttttatcaaaattgtcactcaccctaaca 26708341  T
Q  128 tcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaa 227  Q
    || ||||||| | | |||| |||||| |||||||||| ||||||||| |||| || ||||||||  |||| |||||| |||||||| || ||||||||||    
T  26708342 tcgttgtagatcaactgaacaagagttgtttttccaataccacctaagccaacaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaa 26708441  T
Q  228 gaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttcaa 281  Q
    |||||  || |||||| | |||||| || |||| ||| ||| |||||| |||||    
T  26708442 gaaactcgacaatcttttctttatcatcgtctcttcccaacgcttttgtttcaa 26708495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 281
Target Start/End: Complemental strand, 20295778 - 20295525
Alignment:
Q  28 tgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaactttagtattaaaattgctactcacggtaaca 127  Q
    ||||||| ||| |||||| |||| ||||||||| | ||  |||||| ||||||||||| ||||||||| | |  ||| |||||||| |||||||  | ||    
T  20295778 tgtgatagattctataatagaacgcaaaatcctctcgaaggagaaagtctcagaaacacaaacccaaattcttttatcaaaattgccactcacgcgatca 20295679  T
Q  128 tcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaa 227  Q
    |||||||||||  |||||| |||||| |||||||||| ||||||||| |||| || ||||||||  |||| |||||| |||||||| || ||||||||||    
T  20295678 tcattgtagactaattgaacaagagttgtttttccaataccacctaaaccaacaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaa 20295579  T
Q  228 gaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttcaa 281  Q
    |||||  || |||||| |||||||| || |||| ||| ||  |||||| |||||    
T  20295578 gaaactcgacaatcttttttttatcatcgtctcttcccaatgcttttgattcaa 20295525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 52352842 - 52353020
Alignment:
Q  1 taaatcaaagccatcatacttcttttctgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacagaaacccaaacttta 100  Q
    |||||| ||||||||| |||| | |  ||| ||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |||     
T  52352842 taaatctaagccatcacacttttctcttgtaatagattctataatggaacacaaaatcctattgacagagaaatcctcagaaacacaaacccaaattttt 52352941  T
Q  101 gtattaaaattgctactcacggtaacatcattgtagaccgattgaagaagagtggtttttccaagaccacctaacccaa 179  Q
     ||| ||| ||  |||||||  ||||||||||||||||| |||||| |||||| ||||| |||| ||||||||| ||||    
T  52352942 ctatgaaattttttactcactctaacatcattgtagaccaattgaacaagagttgttttaccaacaccacctaaaccaa 52353020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 280
Target Start/End: Original strand, 13617637 - 13617761
Alignment:
Q  156 tttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaacctgataatcttctttttatcgtc 255  Q
    ||||| ||| ||||||||| |||| || |||||||   ||||| ||||| ||| || |  ||||||||||| ||||||| | |||||||| |||||  ||    
T  13617637 tttttgcaacaccacctaaaccaacaatgggatagtcagaaagaaagtcagaggccctcacttgggtgagatgaaacctaacaatcttctctttattatc 13617736  T
Q  256 ttctcgtccaaacacttttggttca 280  Q
    || |||||||||||| |||| ||||    
T  13617737 ttatcgtccaaacacctttgattca 13617761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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