View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20222_high_11 (Length: 446)
Name: NF20222_high_11
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 2 - 431
Target Start/End: Original strand, 27125373 - 27125800
Alignment:
| Q |
2 |
ttgtgatcctacacagttacaactatggtggtcctacacagtttgaggtttattattctgagagctttattatctatggcggtcctacacagtttgagga |
101 |
Q |
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| T |
27125373 |
ttgtgatactacacagttacaactatggtggtcctacacagtttgatgtttattattctgaaagctttattatctatggtgatcctacacagtttgagga |
27125472 |
T |
|
| Q |
102 |
attggtctctgtacttacgcacaaagataaaccggtttaaactataaataaataaatcaatggtaggagtttaattatttgatcctaatatcccaaaatg |
201 |
Q |
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| T |
27125473 |
attagtctctgcacttgcgtacaaagattaaccggtttaaacaaaaaata--taaagcaatggtaggaatttaattatttgatcctaatatcccaaaatg |
27125570 |
T |
|
| Q |
202 |
agaaggcttcattcacatttgacagcattcaatttgcataaaagcgtctcatacccaatacattgctcaaactgtattggtagattattttcaaagtttt |
301 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
27125571 |
agaagacttcattcacatttgacagcattcaatttgaataaaattaactcataccaaatacattgctcaaactttattgggagattattttcaaagtttt |
27125670 |
T |
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| Q |
302 |
ccgaatgaaaaccactatacttaacggaaagcattacaaaccaaaaactgttatgcagatcatagaccatcattttgctatgtctatgcttattttaaga |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27125671 |
ccgaatgaaaaccactatacttaacggaaagcattacaaaccaaaaactgttatgcagatcatagaccatcattttgcaatgtctatgcttattttaagg |
27125770 |
T |
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| Q |
402 |
ggatttagagaaaatgaaccgcgatgatgt |
431 |
Q |
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| T |
27125771 |
ggatttagagaaaatgaaccacgatgatgt |
27125800 |
T |
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