View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20222_high_12 (Length: 441)

Name: NF20222_high_12
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20222_high_12
NF20222_high_12
[»] chr1 (1 HSPs)
chr1 (13-441)||(10559538-10559965)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 441
Target Start/End: Original strand, 10559538 - 10559965
Alignment:
Q  13 tatagggcacttgtgtatggatgcaaaatcaaattgcaaagaaaaaagtggtgcatgagcgattgcaagtatcacaacaacaaactaggatgagtcaaaa 112  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10559538 tatagggcacttgcgtatggatgcaaaatcaaattgcaaaaaaaaaagtggtgcatgagcgattgcaagtatgacaacaacaaactaggatgagtcaaaa 10559637  T
Q  113 tgaatctaatatttgaaatttggcgtgtgaacgcgatcgccaacacgaaaaacggatccattcacttcaaaccgagcacgacgaaagtgacaacaacaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||| |||||||||    
T  10559638 tgaatctaatatttgaaatttggcgtgtgaacgcgatcgccaacacgaaaa-cggatccattcaccacaaaccgagcacgacgaaagtgaaaacaacaag 10559736  T
Q  213 cataaacgactatgaggcaacctgagatgcagaagagcatccagttcgtgaagccttggctcttttgagcaataaaaaccagagacaaaaccttcagcgc 312  Q
    |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  10559737 cataaacgactatgaggcaacctgagatgcagaagaacatcaagctcgtgaagccttggctcttttgagcaataaaaaccagaggcaaaaccttcggcgc 10559836  T
Q  313 tcccataaacccactaaaacaaccaatcaaggagcatcgtgaatataccaatagtcacggaagccacgaataagtcggcgacgaaaaaggagcagtgtaa 412  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10559837 tcccataaacccactgaaacaaccaatcaaggagcatcgtgaatataccaatagtcacggaagccacgaataagtcggcgacgaaaaaggagcagcgtaa 10559936  T
Q  413 atataccaatagttttagaaacacggcga 441  Q
    |||||||||||||||||||||||| ||||    
T  10559937 atataccaatagttttagaaacacagcga 10559965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University