View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20222_high_14 (Length: 416)

Name: NF20222_high_14
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20222_high_14
NF20222_high_14
[»] chr8 (36 HSPs)
chr8 (157-277)||(13540264-13540382)
chr8 (157-266)||(13684091-13684198)
chr8 (157-265)||(33307070-33307175)
chr8 (62-157)||(11433108-11433203)
chr8 (318-358)||(17650020-17650060)
chr8 (354-406)||(23867874-23867926)
chr8 (354-406)||(24583216-24583268)
chr8 (319-358)||(12342890-12342929)
chr8 (359-406)||(15176482-15176529)
chr8 (320-406)||(28275324-28275411)
chr8 (320-358)||(5151978-5152016)
chr8 (320-358)||(21695413-21695451)
chr8 (320-358)||(25180721-25180759)
chr8 (320-406)||(13313271-13313368)
chr8 (359-406)||(17510904-17510951)
chr8 (359-406)||(18446909-18446956)
chr8 (320-406)||(19265822-19265919)
chr8 (354-405)||(24520047-24520098)
chr8 (355-406)||(25481551-25481602)
chr8 (355-406)||(26139788-26139839)
chr8 (320-358)||(6886729-6886767)
chr8 (320-358)||(14271900-14271938)
chr8 (320-401)||(18829339-18829421)
chr8 (320-358)||(19705045-19705083)
chr8 (320-358)||(21316842-21316880)
chr8 (320-358)||(22501892-22501930)
chr8 (320-358)||(24380353-24380391)
chr8 (320-358)||(29380960-29380998)
chr8 (320-358)||(29765391-29765429)
chr8 (320-361)||(24518588-24518629)
chr8 (361-406)||(29381013-29381058)
chr8 (322-358)||(14077180-14077216)
chr8 (366-406)||(20400334-20400374)
chr8 (322-358)||(26829468-26829504)
chr8 (354-406)||(26888486-26888538)
chr8 (318-358)||(28621663-28621703)
[»] chr2 (27 HSPs)
chr2 (320-406)||(25196611-25196708)
chr2 (355-406)||(24086352-24086403)
chr2 (320-358)||(17891790-17891828)
chr2 (355-406)||(25532236-25532287)
chr2 (321-406)||(18120546-18120642)
chr2 (321-358)||(29892249-29892286)
chr2 (354-406)||(18758301-18758353)
chr2 (322-358)||(28766911-28766947)
chr2 (359-406)||(22569054-22569101)
chr2 (319-358)||(29144694-29144733)
chr2 (319-358)||(45572364-45572403)
chr2 (319-358)||(45576031-45576070)
chr2 (319-358)||(45579698-45579737)
chr2 (319-358)||(45583365-45583404)
chr2 (319-358)||(45587032-45587071)
chr2 (319-358)||(45590699-45590738)
chr2 (319-358)||(45594366-45594405)
chr2 (319-358)||(45598033-45598072)
chr2 (319-358)||(45601700-45601739)
chr2 (319-358)||(45605367-45605406)
chr2 (319-358)||(45609034-45609073)
chr2 (319-358)||(45612701-45612740)
chr2 (319-358)||(45616368-45616407)
chr2 (320-358)||(8445462-8445500)
chr2 (320-358)||(17351037-17351075)
chr2 (320-358)||(25537615-25537653)
chr2 (319-359)||(20853139-20853179)
[»] scaffold0019 (1 HSPs)
scaffold0019 (355-406)||(182557-182608)
[»] chr1 (30 HSPs)
chr1 (320-406)||(9403634-9403721)
chr1 (320-406)||(15542308-15542405)
chr1 (156-207)||(28552824-28552875)
chr1 (355-400)||(25402481-25402526)
chr1 (178-269)||(3859377-3859465)
chr1 (319-406)||(15526805-15526893)
chr1 (356-406)||(18734632-18734682)
chr1 (320-358)||(27912123-27912161)
chr1 (318-406)||(26611329-26611428)
chr1 (318-358)||(7221575-7221615)
chr1 (319-406)||(21663089-21663187)
chr1 (319-406)||(22624616-22624714)
chr1 (355-406)||(22426561-22426612)
chr1 (320-358)||(16817108-16817146)
chr1 (320-358)||(16915195-16915233)
chr1 (320-358)||(24283062-24283100)
chr1 (320-358)||(24464673-24464711)
chr1 (354-406)||(729136-729188)
chr1 (319-406)||(15630932-15631020)
chr1 (319-358)||(14782589-14782628)
chr1 (319-406)||(21333070-21333168)
chr1 (320-358)||(18827455-18827493)
chr1 (320-358)||(22507381-22507419)
chr1 (322-379)||(26022422-26022480)
chr1 (320-358)||(27116223-27116261)
chr1 (244-282)||(28552879-28552917)
chr1 (361-406)||(22507434-22507479)
chr1 (318-358)||(14235282-14235322)
chr1 (354-394)||(15158833-15158873)
chr1 (354-406)||(21450767-21450819)
[»] chr3 (21 HSPs)
chr3 (157-268)||(8890090-8890198)
chr3 (187-282)||(6017599-6017692)
chr3 (354-406)||(25850993-25851045)
chr3 (319-358)||(22470401-22470440)
chr3 (354-400)||(19912586-19912632)
chr3 (360-406)||(20431472-20431518)
chr3 (321-358)||(3429225-3429262)
chr3 (354-406)||(8115339-8115391)
chr3 (354-406)||(18457156-18457208)
chr3 (319-378)||(24516578-24516638)
chr3 (354-406)||(34276482-34276534)
chr3 (187-242)||(6013271-6013326)
chr3 (319-358)||(18535829-18535868)
chr3 (319-358)||(20886927-20886966)
chr3 (320-358)||(7805801-7805839)
chr3 (320-358)||(20021817-20021855)
chr3 (320-361)||(1096761-1096802)
chr3 (317-358)||(2508716-2508757)
chr3 (361-406)||(8765674-8765719)
chr3 (361-406)||(8770564-8770609)
chr3 (354-406)||(12517290-12517342)
[»] chr6 (18 HSPs)
chr6 (318-406)||(17822021-17822121)
chr6 (315-404)||(17379455-17379545)
chr6 (354-406)||(19577582-19577634)
chr6 (354-406)||(21152536-21152588)
chr6 (355-406)||(20004226-20004277)
chr6 (319-358)||(21687128-21687167)
chr6 (318-358)||(9338976-9339016)
chr6 (319-406)||(22404253-22404351)
chr6 (327-358)||(27961273-27961304)
chr6 (320-358)||(9848222-9848260)
chr6 (234-282)||(244177-244223)
chr6 (329-358)||(21845737-21845766)
chr6 (354-406)||(9519732-9519784)
chr6 (318-358)||(14076455-14076495)
chr6 (354-406)||(14078037-14078089)
chr6 (354-406)||(14641632-14641684)
chr6 (354-406)||(19594021-19594073)
chr6 (354-406)||(24469798-24469850)
[»] chr5 (20 HSPs)
chr5 (320-393)||(24513196-24513270)
chr5 (354-406)||(20860339-20860391)
chr5 (354-406)||(23387592-23387644)
chr5 (320-358)||(17831752-17831790)
chr5 (320-358)||(18939579-18939617)
chr5 (202-267)||(22826842-22826905)
chr5 (320-358)||(23110196-23110234)
chr5 (321-358)||(24320522-24320559)
chr5 (361-406)||(34132086-34132131)
chr5 (354-406)||(16521948-16522000)
chr5 (73-117)||(25663598-25663642)
chr5 (354-406)||(28666492-28666544)
chr5 (320-406)||(24142407-24142504)
chr5 (319-358)||(26069308-26069347)
chr5 (319-358)||(26315245-26315284)
chr5 (320-358)||(23214825-23214863)
chr5 (244-277)||(26265980-26266013)
chr5 (318-358)||(19003763-19003803)
chr5 (320-356)||(19053162-19053198)
chr5 (354-406)||(24658345-24658397)
[»] scaffold0003 (1 HSPs)
scaffold0003 (154-282)||(357373-357498)
[»] chr7 (26 HSPs)
chr7 (320-357)||(7399387-7399424)
chr7 (354-406)||(11804698-11804750)
chr7 (318-358)||(23173683-23173723)
chr7 (320-406)||(19201458-19201555)
chr7 (319-358)||(23897299-23897338)
chr7 (320-358)||(9078881-9078919)
chr7 (320-358)||(10332463-10332501)
chr7 (320-358)||(13280818-13280856)
chr7 (320-358)||(13287710-13287748)
chr7 (321-358)||(9134832-9134869)
chr7 (354-406)||(8052473-8052525)
chr7 (319-358)||(1810963-1811002)
chr7 (320-406)||(2927874-2927971)
chr7 (320-406)||(18986744-18986841)
chr7 (320-406)||(19001372-19001469)
chr7 (320-358)||(6039297-6039335)
chr7 (320-358)||(17189710-17189748)
chr7 (320-358)||(19154877-19154915)
chr7 (320-358)||(20754276-20754314)
chr7 (361-406)||(10611713-10611758)
chr7 (354-406)||(8977515-8977567)
chr7 (326-358)||(9918226-9918258)
chr7 (326-358)||(9926138-9926170)
chr7 (320-348)||(20577560-20577588)
chr7 (318-358)||(26249073-26249113)
chr7 (354-402)||(39270317-39270365)
[»] scaffold0016 (1 HSPs)
scaffold0016 (354-406)||(4824-4876)
[»] scaffold0002 (1 HSPs)
scaffold0002 (366-406)||(95624-95664)
[»] scaffold0258 (1 HSPs)
scaffold0258 (320-406)||(20252-20349)
[»] chr4 (19 HSPs)
chr4 (355-406)||(11252175-11252226)
chr4 (320-358)||(12616773-12616811)
chr4 (320-358)||(17277904-17277942)
chr4 (321-358)||(8968072-8968109)
chr4 (354-403)||(15166471-15166520)
chr4 (193-242)||(45561666-45561715)
chr4 (354-406)||(7583792-7583844)
chr4 (318-361)||(14573504-14573547)
chr4 (320-406)||(17335355-17335452)
chr4 (354-405)||(17711307-17711358)
chr4 (320-358)||(11782551-11782589)
chr4 (320-358)||(25025165-25025203)
chr4 (320-357)||(19556541-19556578)
chr4 (321-393)||(19603868-19603941)
chr4 (361-406)||(22171748-22171793)
chr4 (320-357)||(25096357-25096394)
chr4 (322-358)||(12836072-12836108)
chr4 (354-406)||(18750824-18750876)
chr4 (62-126)||(21413919-21413983)
[»] scaffold0043 (1 HSPs)
scaffold0043 (320-358)||(88436-88474)
[»] scaffold0451 (1 HSPs)
scaffold0451 (354-406)||(5730-5782)
[»] scaffold0555 (1 HSPs)
scaffold0555 (319-358)||(6512-6551)
[»] scaffold0032 (2 HSPs)
scaffold0032 (354-405)||(92873-92924)
scaffold0032 (318-358)||(92826-92866)
[»] scaffold0005 (1 HSPs)
scaffold0005 (318-361)||(243829-243872)
[»] scaffold0386 (1 HSPs)
scaffold0386 (322-358)||(4874-4910)
[»] scaffold0024 (1 HSPs)
scaffold0024 (354-406)||(41339-41391)


Alignment Details
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 13540382 - 13540264
Alignment:
Q  157 tgataagtcttaatttaaggggtttttagccatttcaattcaataatatttgtgtaactttgatcttactttggagctattttactatacaaaacattag 256  Q
    ||||||||| ||||||| || ||||| ||||||||||||| |||||||||| || | ||||| ||||||||||||||||||||||  | |||||||||||    
T  13540382 tgataagtcataatttagggtgttttaagccatttcaatttaataatatttttggatctttggtcttactttggagctattttac--ttcaaaacattag 13540285  T
Q  257 ttttcattttcaggatcaaat 277  Q
    |||| ||||| |||| |||||    
T  13540284 tttttattttgaggaccaaat 13540264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 13684091 - 13684198
Alignment:
Q  157 tgataagtcttaatttaaggggtttttagccatttcaattcaataatatttgtgtaactttgatcttactttggagctattttactatacaaaacattag 256  Q
    ||||||||| ||||||| || ||||| ||||||||||||| |||||||||| || | ||||| ||||||||||||||||||||||  | |||||||||||    
T  13684091 tgataagtcataatttagggtgttttaagccatttcaatttaataatatttttggatctttggtcttactttggagctattttac--ttcaaaacattag 13684188  T
Q  257 ttttcatttt 266  Q
    |||| |||||    
T  13684189 tttttatttt 13684198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 33307070 - 33307175
Alignment:
Q  157 tgataagtcttaatttaaggggtttttagccatttcaattcaataatatttgtgtaactttgatcttactttggagctattttactatacaaaacattag 256  Q
    |||||||||||||| || || ||||||||| |||| |||||||||||||||||| | ||||| ||||||||| |||||||||||   ||||||| |||||    
T  33307070 tgataagtcttaatgtagggtgtttttagc-atttgaattcaataatatttgtggatctttggtcttactttagagctatttta--ttacaaaaaattag 33307166  T
Q  257 ttttcattt 265  Q
    |||||||||    
T  33307167 ttttcattt 33307175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 11433108 - 11433203
Alignment:
Q  62 ttgttgagataaatcacacaatcctttttaagttgacgttttaatgaaaacaaactcattcgaattaaagatatcgatatgattcttatccttgtt 157  Q
    |||||||||||||||||| ||||| | |||| |||| |||||||||| |||||||| ||| ||||||||||  || |||||||||| |||| ||||    
T  11433108 ttgttgagataaatcacaaaatccgtcttaacttgatgttttaatgacaacaaacttatttgaattaaagagctcaatatgattctgatccatgtt 11433203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 17650060 - 17650020
Alignment:
Q  318 gttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  17650060 gttgatgacaagtcatcttacgttattcttaacatgttttt 17650020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 23867874 - 23867926
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||||| |||||||||||| | ||| ||||||||||||||||||||||    
T  23867874 tttttagtaggttttagcagcaaagacgaggagtattagaacgattgcctatg 23867926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 24583216 - 24583268
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||||  |||||||||||||| ||| ||||||||||||||||||||||    
T  24583216 tttttagtagattttagcagcaaaaaggaggagtattagaacgattgcctatg 24583268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 12342890 - 12342929
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  12342890 ttgatgacatgtcatcttacgttattcttaacttgttttt 12342929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 15176482 - 15176529
Alignment:
Q  359 agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  15176482 agtaggttttagcagcaaaaaggaggagtattagaacgattgcctatg 15176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 28275324 - 28275411
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt-agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||  ||||||||||||||||||| ||||||||| |||||| |||| ||| |||| |||| |||||||||   ||||||||||    
T  28275324 tgatgacaaatcatcttacgttattcttagcatgtttttcagtaggttttaccaggaaaacagaggagtattagagtaattgcctatg 28275411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 5152016 - 5151978
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  5152016 tgatgacaagtcatcttacgttattcttaacatgttttt 5151978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 21695413 - 21695451
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  21695413 tgatgacatgtcatcttacgttattcttagcatgttttt 21695451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 25180721 - 25180759
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  25180721 tgatgacatgtcatcttacgttatccttaacatgttttt 25180759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 13313271 - 13313368
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt-----------agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||| |||||||||||||||| |||||||||           | |||| |||||||||||||| ||| ||||||||||| ||||||||||    
T  13313271 tgatgacatgtcgtcttacgttattcttagcatgtttttcagtcattttcaataggttttagcagcaaaaaggaggagtattagaacaattgcctatg 13313368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 17510951 - 17510904
Alignment:
Q  359 agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||| |||||| ||||||| ||| ||||||||||||||||||||||    
T  17510951 agtaggttttagctgcaaaaaggaggagtattagaacgattgcctatg 17510904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 18446909 - 18446956
Alignment:
Q  359 agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| ||||||    
T  18446909 agtaggatttagcagcaaaaaggaggagtattagaaccatttcctatg 18446956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 19265919 - 19265822
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgt-----------ttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||| |||||||||||||||||||| |||||           ||||||||||||||| || |||||| ||| ||||||||||| ||||||||||    
T  19265919 tgatgacaggtcatcttacgttattcttagcatgtttttcagtttattttagtaggatttaacaacaaaaaggaggagtattagaacaattgcctatg 19265822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 24520047 - 24520098
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctat 405  Q
    |||| |||||||||||| |||||||| || |||||||||||| |||||||||    
T  24520047 ttttcagtaggatttagtagcaaaaaggataagtattagaacaattgcctat 24520098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 25481551 - 25481602
Alignment:
Q  355 ttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||  |||||||||||  ||| ||||||||||||||||||||||    
T  25481551 ttttagtaggaaatagcagcaaaatggaggagtattagaacgattgcctatg 25481602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 26139839 - 26139788
Alignment:
Q  355 ttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||  ||||| |||||| ||| ||||||||||||||||||||||    
T  26139839 ttttagtaggaaatagcatcaaaaaggaggagtattagaacgattgcctatg 26139788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 6886767 - 6886729
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  6886767 tgatgacaagtcatcttacgttattcttagcatgttttt 6886729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 14271938 - 14271900
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  14271938 tgatgacaggtcatcttacgttattcttagcatgttttt 14271900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 401
Target Start/End: Complemental strand, 18829421 - 18829339
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt-agtaggatttagcagcaaaaaagagaagtattagaacgattgc 401  Q
    ||||||||  |||||||| |||||||||| ||||||||| | |||| |||||||||||||| ||  | ||||||||| |||||    
T  18829421 tgatgacagttcatcttatgttattcttagcatgtttttcaataggttttagcagcaaaaaggaagaatattagaactattgc 18829339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 19705083 - 19705045
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  19705083 tgatgacatgtcatcttacgttattcttagtatgttttt 19705045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 21316880 - 21316842
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  21316880 tgatgacaggtcatcttacgttattcttagcatgttttt 21316842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 22501930 - 22501892
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  22501930 tgatgacatatcatcttacgttattcttatcatgttttt 22501892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 24380353 - 24380391
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  24380353 tgataacatgtcatcttacgttattcttagcatgttttt 24380391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 29380960 - 29380998
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  29380960 tgatgacaggtcatcttacgttattcttagcatgttttt 29380998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 29765391 - 29765429
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  29765391 tgatgacaggtcatcttacgttattcttagcatgttttt 29765429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 361
Target Start/End: Original strand, 24518588 - 24518629
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgtttttagt 361  Q
    |||||||||||||||| ||||||||||||  |||||||||||    
T  24518588 tgatgacatgtcatctaacgttattcttagtatgtttttagt 24518629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 29381013 - 29381058
Alignment:
Q  361 taggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| ||||| |||||||| ||| ||||||||||||||||||||||    
T  29381013 taggttttagtagcaaaaaggaggagtattagaacgattgcctatg 29381058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 14077216 - 14077180
Alignment:
Q  322 atgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  14077216 atgacaagtcatcttacgttcttcttaacatgttttt 14077180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 20400374 - 20400334
Alignment:
Q  366 tttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||||| ||| ||||||||||||||| ||||||    
T  20400374 tttagcagcaaaaaggaggagtattagaacgatttcctatg 20400334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 26829468 - 26829504
Alignment:
Q  322 atgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||| |||||||||||||||||||| |||||||||    
T  26829468 atgacacgtcatcttacgttattcttagcatgttttt 26829504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 26888538 - 26888486
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||||| ||||||| |||||| ||| |||||| ||||||||| |||||    
T  26888538 tttttagtaggttttagcaacaaaaaggaggagtattggaacgattgtctatg 26888486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 28621703 - 28621663
Alignment:
Q  318 gttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||| ||||||| |||||||||||| |||||||||    
T  28621703 gttgatgacaggtcatctaacgttattcttagcatgttttt 28621663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 25196708 - 25196611
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt-----------agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||||||||| ||||||||||||||||||||           ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25196708 tgatgacatgtcatcttatgttattcttaacatgtttttcagtttattttagtaggatttagcagcaaaaaagagaagtattaaaacgattgcctatg 25196611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 24086352 - 24086403
Alignment:
Q  355 ttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  24086352 ttttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatg 24086403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 17891828 - 17891790
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17891828 tgatgacatgtcatcttacgttattcttaacatgttttt 17891790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 25532287 - 25532236
Alignment:
Q  355 ttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||  |||||||||||| ||| ||||||||||||||||||||||    
T  25532287 ttttagtaggaaatagcagcaaaaaggaggagtattagaacgattgcctatg 25532236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 406
Target Start/End: Original strand, 18120546 - 18120642
Alignment:
Q  321 gatgacatgtcatcttacgttattcttaacatgt-----------ttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||||||||||||||||||| |||||           |||||||||||  |||||||||||  ||| ||||||||||||||||||||||    
T  18120546 gatgacatgtcatcttacgttattcttagcatgtttttcagtttattttagtaggaaatagcagcaaaatggaggagtattagaacgattgcctatg 18120642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 29892286 - 29892249
Alignment:
Q  321 gatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||||||||||| |||||    
T  29892286 gatgacatgtcatcttacgttattcttaacatattttt 29892249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 18758353 - 18758301
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| ||||| |||||||| ||| ||||||||||||||||||||||    
T  18758353 ttttcagtaggttttagtagcaaaaaggaggagtattagaacgattgcctatg 18758301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 28766947 - 28766911
Alignment:
Q  322 atgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||| ||||||||||||||||||||||||||||||    
T  28766947 atgacaggtcatcttacgttattcttaacatgttttt 28766911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 22569101 - 22569054
Alignment:
Q  359 agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||| |||||||| ||||| ||||||||||||||||||| ||||||    
T  22569101 agtaggttttagcagaaaaaatgagaagtattagaacgattacctatg 22569054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 29144733 - 29144694
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  29144733 ttgatgacaggtcatcttacgttattcttagcatgttttt 29144694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 45572364 - 45572403
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  45572364 ttgatgacatgtcatcttacgttaatcttagcatgttttt 45572403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 45576031 - 45576070
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  45576031 ttgatgacatgtcatcttacgttaatcttagcatgttttt 45576070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 45579698 - 45579737
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  45579698 ttgatgacatgtcatcttacgttaatcttagcatgttttt 45579737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 45583365 - 45583404
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  45583365 ttgatgacatgtcatcttacgttaatcttagcatgttttt 45583404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 45587032 - 45587071
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  45587032 ttgatgacatgtcatcttacgttaatcttagcatgttttt 45587071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 45590699 - 45590738
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  45590699 ttgatgacatgtcatcttacgttaatcttagcatgttttt 45590738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 45594366 - 45594405
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  45594366 ttgatgacatgtcatcttacgttaatcttagcatgttttt 45594405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 45598033 - 45598072
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  45598033 ttgatgacatgtcatcttacgttaatcttagcatgttttt 45598072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 45601700 - 45601739
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  45601700 ttgatgacatgtcatcttacgttaatcttagcatgttttt 45601739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 45605367 - 45605406
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  45605367 ttgatgacatgtcatcttacgttaatcttagcatgttttt 45605406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 45609034 - 45609073
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  45609034 ttgatgacatgtcatcttacgttaatcttagcatgttttt 45609073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 45612701 - 45612740
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  45612701 ttgatgacatgtcatcttacgttaatcttagcatgttttt 45612740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 45616368 - 45616407
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  45616368 ttgatgacatgtcatcttacgttaatcttagcatgttttt 45616407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 8445462 - 8445500
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  8445462 tgatgacatgtcatcttatgttattcttaacatattttt 8445500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 17351075 - 17351037
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  17351075 tgatgacaagtcatcttacgttattcttaacatattttt 17351037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 25537653 - 25537615
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  25537653 tgatgacaggtcatcttacgttattcttagcatgttttt 25537615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 359
Target Start/End: Complemental strand, 20853179 - 20853139
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttta 359  Q
    ||||||||||||||||| |||||||| ||| ||||||||||    
T  20853179 ttgatgacatgtcatctcacgttattattagcatgttttta 20853139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 182557 - 182608
Alignment:
Q  355 ttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  182557 ttttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatg 182608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 9403721 - 9403634
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt-agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||  ||||||||| ||||||||| ||||||||| |||||| ||||||||||||||  || |||||||||||| |||||||||    
T  9403721 tgatgacagatcatcttacattattcttagcatgtttttcagtaggttttagcagcaaaaagaaggagtattagaacgtttgcctatg 9403634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 15542308 - 15542405
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt-----------agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||||||||||||||||||||||||||||||           |||||| ||||||||||||||  || ||||||||||||||||||||||    
T  15542308 tgatgacatgtcatcttacgttattcttaacatgtttttcagtcattttcagtaggttttagcagcaaaaagtaggagtattagaacgattgcctatg 15542405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 28552824 - 28552875
Alignment:
Q  156 ttgataagtcttaatttaaggggtttttagccatttcaattcaataatattt 207  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  28552824 ttgataagtcttaatttatggtgtttttagccatttcaattcaataatattt 28552875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 400
Target Start/End: Original strand, 25402481 - 25402526
Alignment:
Q  355 ttttagtaggatttagcagcaaaaaagagaagtattagaacgattg 400  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  25402481 ttttagtaggatttagcagcaaaaaagaggagtattagaacgattg 25402526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 269
Target Start/End: Complemental strand, 3859465 - 3859377
Alignment:
Q  178 gtttttagccatttcaattcaataatatttgtgtaactttgatcttactttggagctattttactatacaaaacattagttttcattttcag 269  Q
    ||||||||| |||| ||||||||||||||| || |||| || ||||||||| |||||| |||||  |||||| |||||||||||||||||||    
T  3859465 gtttttagc-atttgaattcaataatatttatggaactctggtcttactttagagctaatttac--tacaaatcattagttttcattttcag 3859377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 406
Target Start/End: Original strand, 15526805 - 15526893
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt-agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||  |||| |||||||| || | |||||||||   ||||||||||    
T  15526805 ttgatgacatgtcatcttacgttattcttatcatgtttttcagtagattttaccagcaaaacaggggagtattagagtaattgcctatg 15526893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 18734632 - 18734682
Alignment:
Q  356 tttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  18734632 tttagtaggatttaacagcaaaaaggaggagtattagaacgattgcctatg 18734682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 27912161 - 27912123
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27912161 tgatgacatgtcatcttacgttattcttaacatgttttt 27912123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 406
Target Start/End: Original strand, 26611329 - 26611428
Alignment:
Q  318 gttgatgacatgtcatcttacgttattcttaacatgttttt-----------agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||| |||||||||||||||||||| |||||||||           ||||||||||||||||||||| ||| |||||| ||| |||||||||||    
T  26611329 gttgatgacaggtcatcttacgttattcttagcatgtttttcaattaatattagtaggatttagcagcaaaaaggaggagtattggaatgattgcctatg 26611428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 7221615 - 7221575
Alignment:
Q  318 gttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  7221615 gttgataacatgtcatcttacgttattcttaacatgttttt 7221575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 406
Target Start/End: Original strand, 21663089 - 21663187
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt-----------agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||| |||||||||||||||||||| |||||||||           |||||| |||| || |||||| ||||||||||||||||||||||||||    
T  21663089 ttgatgacaggtcatcttacgttattcttagcatgtttttcagtcattttcagtaggttttaacatcaaaaaggagaagtattagaacgattgcctatg 21663187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 406
Target Start/End: Complemental strand, 22624714 - 22624616
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttta-----------gtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||||||||||| ||||||||| ||||||||||           |||||||||||||||||||| ||| ||||||| || |||||||||||    
T  22624714 ttgatgacatgtcatcttacattattcttagcatgtttttaagtttattttagtaggatttagcagcaaaaaggaggagtattaaaatgattgcctatg 22624616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 22426561 - 22426612
Alignment:
Q  355 ttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||  |||||||||||| ||| ||||||||||||||||||||||    
T  22426561 ttttagtaggaaatagcagcaaaaaggaggagtattagaacgattgcctatg 22426612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 16817108 - 16817146
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  16817108 tgatgacaagtcatcttacgttattcttaacatgttttt 16817146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 16915195 - 16915233
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  16915195 tgatgacacgtcatcttacgttattcttaacatgttttt 16915233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 24283100 - 24283062
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  24283100 tgatgacatatcatcttacgttattcttaacatgttttt 24283062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 24464711 - 24464673
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  24464711 tgatgacatgtcatcttacgttattcttagcatgttttt 24464673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 729188 - 729136
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  729188 ttttcagtaggttttagcagcaaaaaggaggagtattagaacgattgtctatg 729136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 406
Target Start/End: Original strand, 15630932 - 15631020
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt-agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||| || |||||| |||||||||| ||||||||| |||    ||||||  |||||| ||| ||||||||||||||||||||||    
T  15630932 ttgatgacaggttatcttatgttattcttagcatgttttttagtcatttttagctacaaaaaggaggagtattagaacgattgcctatg 15631020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 14782628 - 14782589
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  14782628 ttgatgacaggtcatcttacgttattcttagcatgttttt 14782589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 406
Target Start/End: Original strand, 21333070 - 21333168
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttt-----ttag------taggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||||||||||||| ||||||||||| ||||||     ||||      |||| |||||||| ||||| ||||||||||| ||||||||||||||    
T  21333070 ttgatgacatgtcatcttatgttattcttaatatgttttgcacttagtttcaataggttttagcaggaaaaaggagaagtattaaaacgattgcctatg 21333168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 18827493 - 18827455
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  18827493 tgatgactggtcatcttacgttattcttaacatgttttt 18827455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 22507381 - 22507419
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  22507381 tgatgacatgtgatcttacgttattcttagcatgttttt 22507419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 26022480 - 26022422
Alignment:
Q  322 atgacatgtcatcttacgttattcttaacatgttttt-agtaggatttagcagcaaaaa 379  Q
    |||||| || ||||||||||||||||| ||||||||| |||||| |||| |||||||||    
T  26022480 atgacaggtgatcttacgttattcttagcatgtttttcagtaggttttaccagcaaaaa 26022422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 27116223 - 27116261
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  27116223 tgatgaaatgtcatcttacgtttttcttaacatgttttt 27116261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 28552879 - 28552917
Alignment:
Q  244 tacaaaacattagttttcattttcaggatcaaatgatga 282  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  28552879 tacaaaacattagttttcattttcaggaccaaataatga 28552917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 22507434 - 22507479
Alignment:
Q  361 taggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||||    
T  22507434 taggttttagcggcaaaaaggaggagtattagaacgattgcctatg 22507479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 14235282 - 14235322
Alignment:
Q  318 gttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||| ||||||||||||||||| ||||| |||||||||    
T  14235282 gttgatggcatgtcatcttacgttactcttagcatgttttt 14235322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 15158833 - 15158873
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaa 394  Q
    |||| ||||||||||||||||||||| ||| ||||||||||    
T  15158833 ttttaagtaggatttagcagcaaaaaggaggagtattagaa 15158873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 21450819 - 21450767
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| ||| |||||| ||| |||||||||||    
T  21450819 ttttcagtaggttttagcagcaaaaaggaggagtattggaaagattgcctatg 21450767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 268
Target Start/End: Original strand, 8890090 - 8890198
Alignment:
Q  157 tgataagtcttaatttaaggggtttttagccatttcaattcaataatatttgtgtaactttgatcttactttggagctattttactatacaaaacattag 256  Q
    |||||||||||||||||  |  |||||| | |||| |||||||||||||||||| || |||| || |||||| |||||| |||||  ||||||| |||||    
T  8890090 tgataagtcttaatttagcgtatttttaac-atttgaattcaataatatttgtggaattttggtcatactttagagctactttac--tacaaaatattag 8890186  T
Q  257 ttttcattttca 268  Q
    ||||||||||||    
T  8890187 ttttcattttca 8890198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 6017599 - 6017692
Alignment:
Q  187 catttcaattcaataatatttgtgtaactttgatcttactttggagctattttactatacaaaacattagttttcattttcaggatcaaatgatga 282  Q
    ||||| |||||||||||||||||| ||||||  |||| |||| ||||||||||||  | ||||| |||||||||||| || ||||| |||| ||||    
T  6017599 catttgaattcaataatatttgtggaactttagtcttgctttagagctattttac--tgcaaaatattagttttcatatttaggataaaataatga 6017692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 25850993 - 25851045
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||    
T  25850993 tttttagtaggatttagcagcagaaaggaggagtattaaaacgattgcctatg 25851045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 22470401 - 22470440
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  22470401 ttgatgacatgtcatcttacgttattcttagcatgttttt 22470440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 19912632 - 19912586
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattg 400  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||||    
T  19912632 ttttcagtaggttttagcagcaaaaaagaggagtattagaacgattg 19912586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 20431518 - 20431472
Alignment:
Q  360 gtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  20431518 gtaggttttagcagcaaaaaggaggagtattagaacgattgcctatg 20431472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 3429225 - 3429262
Alignment:
Q  321 gatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||||||| |||||||||    
T  3429225 gatgacatgtcatcttacgttattcttatcatgttttt 3429262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 8115339 - 8115391
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| ||||| |||||||| ||| ||||||||||||||||||||||    
T  8115339 ttttgagtaggttttagtagcaaaaaggaggagtattagaacgattgcctatg 8115391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 18457156 - 18457208
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| ||| ||||||||||| ||||||||||    
T  18457156 ttttcagtaggttttagcagcaaaaaggaggagtattagaacaattgcctatg 18457208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 378
Target Start/End: Complemental strand, 24516638 - 24516578
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt-agtaggatttagcagcaaaa 378  Q
    |||||||||||||| |||| |||||||||| ||||||||| |||||| |||| ||||||||    
T  24516638 ttgatgacatgtcaccttatgttattcttagcatgtttttcagtaggttttaccagcaaaa 24516578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 34276482 - 34276534
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| ||| ||||||| ||||||||||||||    
T  34276482 ttttcagtaggttttagcagcaaaaaggaggagtattataacgattgcctatg 34276534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 6013271 - 6013326
Alignment:
Q  187 catttcaattcaataatatttgtgtaactttgatcttactttggagctattttact 242  Q
    ||||| |||||||||||||||||| ||||||  |||| |||| |||||||||||||    
T  6013271 catttgaattcaataatatttgtggaactttagtcttgctttagagctattttact 6013326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 18535868 - 18535829
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  18535868 ttgatgacaagtcatcttacgttattcttagcatgttttt 18535829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 20886966 - 20886927
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  20886966 ttgatgacaggtcatcttacgttattcttagcatgttttt 20886927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 7805839 - 7805801
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  7805839 tgatgacaggtcatcttacgttattcttagcatgttttt 7805801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 20021817 - 20021855
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  20021817 tgatgacatgtcatcttacgttactcttagcatgttttt 20021855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 361
Target Start/End: Original strand, 1096761 - 1096802
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgtttttagt 361  Q
    |||||||| |||||||||||||||||||  ||||||||||||    
T  1096761 tgatgacaggtcatcttacgttattctttgcatgtttttagt 1096802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 2508716 - 2508757
Alignment:
Q  317 ggttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| |||||||||||||||||||||||  ||||||||    
T  2508716 ggttgatggcatgtcatcttacgttattcttagtatgttttt 2508757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 8765719 - 8765674
Alignment:
Q  361 taggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| ||||||||||| ||||||||||||||| ||||||    
T  8765719 taggttttagctgcaaaaaagaggagtattagaacgatttcctatg 8765674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 8770609 - 8770564
Alignment:
Q  361 taggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| ||||||||||| ||||||||||||||| ||||||    
T  8770609 taggttttagctgcaaaaaagaggagtattagaacgatttcctatg 8770564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 12517342 - 12517290
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| ||||| |||||||| ||| |||||||||| |||||||||||    
T  12517342 ttttcagtaggttttagtagcaaaaaggaggagtattagaatgattgcctatg 12517290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 406
Target Start/End: Original strand, 17822021 - 17822121
Alignment:
Q  318 gttgatgacatgtcatcttacgttattcttaacatgttttt------------agtaggatttagcagcaaaaaagagaagtattagaacgattgcctat 405  Q
    ||||| ||||||||||||||||||||||||| |||||||||            | ||||||||||||||||||| ||| |||||||||||||||||||||    
T  17822021 gttgaagacatgtcatcttacgttattcttagcatgtttttctagttattttcaataggatttagcagcaaaaaggaggagtattagaacgattgcctat 17822120  T
Q  406 g 406  Q
    |    
T  17822121 g 17822121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 17379455 - 17379545
Alignment:
Q  315 atggttgatgacatgtcatcttacgttattcttaacatgttttt-agtaggatttagcagcaaaaaagagaagtattagaacgattgccta 404  Q
    ||||| |||||||  ||||||||||||||||||| ||||||||| |||||| ||||  |||||||| ||  ||||||||||||||| ||||    
T  17379455 atggtcgatgacaattcatcttacgttattcttagcatgtttttcagtaggttttataagcaaaaaggatgagtattagaacgattcccta 17379545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 19577582 - 19577634
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  19577582 ttttcagtaggttttagcagcaaaaaggaggagtattagaacgattgcctatg 19577634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 21152536 - 21152588
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||| |||||    
T  21152536 tttttagtaggattaagcagcaaaaaggaggagtattagaacgattgtctatg 21152588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 20004226 - 20004277
Alignment:
Q  355 ttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||||||| |||||||||||| ||| |||| |||||||||||||    
T  20004226 ttttagtaggatttagtagcaaaaaagaggagtgttagcacgattgcctatg 20004277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 21687128 - 21687167
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  21687128 ttgatgacatgtcatcttacgttattcttagcatgttttt 21687167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 9338976 - 9339016
Alignment:
Q  318 gttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  9338976 gttgataacatgtcatcttacgtcattcttaacatgttttt 9339016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 406
Target Start/End: Original strand, 22404253 - 22404351
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt-----------agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||||||||| ||||||||||| |||||||||           |||||| |||||||||||||| ||| ||||||| |||||||| |||||    
T  22404253 ttgatgacatgtcatctttcgttattcttatcatgtttttcagtaaatttcagtaggttttagcagcaaaaaggaggagtattaaaacgattgtctatg 22404351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 358
Target Start/End: Complemental strand, 27961304 - 27961273
Alignment:
Q  327 atgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||||||||||||||||    
T  27961304 atgtcatcttacgttattcttaacatgttttt 27961273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 9848260 - 9848222
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  9848260 tgatgacatgtcatttgacgttattcttaacatgttttt 9848222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 244223 - 244177
Alignment:
Q  234 tattttactatacaaaacattagttttcattttcaggatcaaatgatga 282  Q
    ||||||||||||  |||||||||||||||||||||||| ||||| ||||    
T  244223 tattttactata--aaacattagttttcattttcaggaccaaataatga 244177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 358
Target Start/End: Original strand, 21845737 - 21845766
Alignment:
Q  329 gtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||||||||||||||    
T  21845737 gtcatcttacgttattcttaacatgttttt 21845766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 9519784 - 9519732
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| ||||| ||||||||||||||| ||| ||||||||| | ||||||||||    
T  9519784 ttttcagtagtatttagcagcaaaaaggaggagtattagagcaattgcctatg 9519732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 14076495 - 14076455
Alignment:
Q  318 gttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||| |||||||||||||||||||| |||| ||||    
T  14076495 gttgatgacaggtcatcttacgttattcttagcatggtttt 14076455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 14078089 - 14078037
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| ||||||||||||||||||| | ||| ||||||||| | ||||||||||    
T  14078089 ttttcagtaggatttagcagcaaagaggaggagtattagagcaattgcctatg 14078037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 14641684 - 14641632
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| ||| ||||||||||| ||| ||||||    
T  14641684 ttttcagtaggttttagcagcaaaaaggaggagtattagaacaattacctatg 14641632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 19594021 - 19594073
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||| ||||||| ||| ||||||||||| ||||||||||    
T  19594021 ttttcagtaggttttagctgcaaaaaggaggagtattagaacaattgcctatg 19594073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 24469850 - 24469798
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||  ||||||||| ||| ||||||||||||||||||||||    
T  24469850 ttttcagtaggttttgacagcaaaaaggaggagtattagaacgattgcctatg 24469798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 393
Target Start/End: Original strand, 24513196 - 24513270
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt-agtaggatttagcagcaaaaaagagaagtattaga 393  Q
    |||| ||| |||||||||||||||||||| ||||||||| |||||  || ||||||||||||||| |||||||||    
T  24513196 tgattacaggtcatcttacgttattcttagcatgtttttcagtagatttcagcagcaaaaaagaggagtattaga 24513270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 20860391 - 20860339
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  20860391 ttttcagtaggttttagcagcaaaaaggagaagtattagaacaattgcctatg 20860339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 23387592 - 23387644
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  23387592 ttttcagtaggttttagcagcaaaaaggaggagtattagaacgattgcctatg 23387644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 17831790 - 17831752
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  17831790 tgatgacatgtcatcttacgttattcttagcatgttttt 17831752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 18939617 - 18939579
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  18939617 tgatgacaggtcatcttacgttattcttaacatgttttt 18939579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 22826905 - 22826842
Alignment:
Q  202 atatttgtgtaactttgatcttactttggagctattttactatacaaaacattagttttcattttc 267  Q
    ||||||||| ||||||| ||||||||| ||| ||||||||||  ||||||| ||||||||||||||    
T  22826905 atatttgtggaactttggtcttactttagagatattttacta--caaaacaatagttttcattttc 22826842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 23110196 - 23110234
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  23110196 tgatgacgtgtcatcttacgttattcttaacatgttttt 23110234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 24320522 - 24320559
Alignment:
Q  321 gatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  24320522 gatgacaggtcatcttacgttattcttaacatgttttt 24320559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 34132131 - 34132086
Alignment:
Q  361 taggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||||||||||| ||||||||||||||||| ||||||||    
T  34132131 taggttttagcagcaaaaaggagaagtattagaacgactgcctatg 34132086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 16521948 - 16522000
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||||||  |||||||||||  ||| ||||||||||||||||||||||    
T  16521948 tttttagtaggaaatagcagcaaaatggaggagtattagaacgattgcctatg 16522000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 25663642 - 25663598
Alignment:
Q  73 aatcacacaatcctttttaagttgacgttttaatgaaaacaaact 117  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||||    
T  25663642 aatcacaaaatcctttttaagttgatgttttaatgataacaaact 25663598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 28666544 - 28666492
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| |||||||||||||| || ||||||||    
T  28666544 ttttcagtaggttttagcagcaaaaaggagaagtattagaatgactgcctatg 28666492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 24142504 - 24142407
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgt-----------ttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||||||||| |||||||||| |||||           ||||||||| |||||||| |||||||||| |||||||||| |||| ||||||    
T  24142504 tgatgacatgtcatcttatgttattcttagcatgtttttcagtttattttagtagaatttagcatcaaaaaagaggagtattagaaagatttcctatg 24142407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 26069347 - 26069308
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  26069347 ttgatgacaagttatcttacgttattcttaacatgttttt 26069308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 26315284 - 26315245
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  26315284 ttgatgacatgtcatcttacgttattcttagcattttttt 26315245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 23214825 - 23214863
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  23214825 tgatgacaggtcatcttacgttattcttagcatgttttt 23214863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 26265980 - 26266013
Alignment:
Q  244 tacaaaacattagttttcattttcaggatcaaat 277  Q
    |||||||||||||||||||||||||||| |||||    
T  26265980 tacaaaacattagttttcattttcaggaccaaat 26266013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 19003763 - 19003803
Alignment:
Q  318 gttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||| ||||||||||||||||  |||||||||    
T  19003763 gttgatgacatgtgatcttacgttattcttggcatgttttt 19003803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 19053198 - 19053162
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttt 356  Q
    |||||||||||||| |||||||||||||| |||||||    
T  19053198 tgatgacatgtcattttacgttattcttagcatgttt 19053162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 24658345 - 24658397
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||||| |||||||||||||| ||| |||||||| | ||| |||||||    
T  24658345 tttttagtaggttttagcagcaaaaaggaggagtattagtaagatagcctatg 24658397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 282
Target Start/End: Complemental strand, 357498 - 357373
Alignment:
Q  154 tgttgataagtcttaatttaaggggtttttagccatttcaattcaataatatttgtgtaactttgatcttactttggagctattttactatacaaaacat 253  Q
    |||||||||||||| ||||| ||  |||||||| |||| |||| |||||||||| |  || |||  ||||| | | |||||||||||||||| ||  |||    
T  357498 tgttgataagtcttgatttagggtatttttagc-atttgaattaaataatatttattaaaattttgtcttattatagagctattttactatagaa--cat 357402  T
Q  254 tagttttcattttcaggatcaaatgatga 282  Q
    ||||||||||||||||||| |||| ||||    
T  357401 tagttttcattttcaggataaaataatga 357373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 7399424 - 7399387
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgtttt 357  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7399424 tgatgacatgtcatcttacgttattcttaacatgtttt 7399387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 11804750 - 11804698
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  11804750 ttttcagtaggttttagcagcaaaaaggagcagtattagaacgattgcctatg 11804698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 23173683 - 23173723
Alignment:
Q  318 gttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  23173683 gttgatgacatgtcatcttacgttattcttagcatgttttt 23173723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 19201555 - 19201458
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt-----------agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||| ||||||||| ||||||||||||||||||||           ||||||||||||||||||||| | | | ||||||||||||||||||||    
T  19201555 tgatgacaggtcatcttatgttattcttaacatgtttttctgttattttcagtaggatttagcagcaaaaaggtggactattagaacgattgcctatg 19201458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 23897338 - 23897299
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  23897338 ttgatgacatgtcatcttacattattcttaacatgttttt 23897299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 9078881 - 9078919
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  9078881 tgatgacatgtcatcttacgttattcttagcatgttttt 9078919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 10332501 - 10332463
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  10332501 tgatgacatgtcatcttacgttattcttagcatgttttt 10332463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 13280856 - 13280818
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  13280856 tgatgacatgtcatcttacgttattcttagcatgttttt 13280818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 13287710 - 13287748
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  13287710 tgatgacaagtcatcttacgttattcttaacatgttttt 13287748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 9134869 - 9134832
Alignment:
Q  321 gatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||||||||||| |||||    
T  9134869 gatgacatgtcatcttacgttattcttaacatattttt 9134832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 8052473 - 8052525
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| ||| |||||||||| |||||||||||    
T  8052473 ttttcagtaggttttagcagcaaaaatgaggagtattagaatgattgcctatg 8052525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 1811002 - 1810963
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  1811002 ttgatgacatgtcatcttacgttattcgtagcatgttttt 1810963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 2927971 - 2927874
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgt-----------ttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||| |||||||||||||||||||| |||||           |||||||||||||||| |||||||| ||| |||||||||| |||| ||||||    
T  2927971 tgatgacaggtcatcttacgttattcttagcatgtttttcagtttattttagtaggatttagtagcaaaaatgaggagtattagaaagattacctatg 2927874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 18986744 - 18986841
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt-----------agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||| ||||||||||||||||||| |||||||||           |||||  |||||||||||||| ||| ||||||||||||| ||||||||    
T  18986744 tgatgacatatcatcttacgttattcttagcatgtttttcagtcaatttcagtagattttagcagcaaaaaggaggagtattagaacgactgcctatg 18986841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 19001372 - 19001469
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt-----------agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||| ||||||||||||||||||| |||||||||           |||||  |||||||||||||| ||| ||||||||||||| ||||||||    
T  19001372 tgatgacatatcatcttacgttattcttagcatgtttttcagtcaatttcagtagattttagcagcaaaaaggaggagtattagaacgactgcctatg 19001469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 6039297 - 6039335
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  6039297 tgatgtcatgtcatcttacattattcttaacatgttttt 6039335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 17189710 - 17189748
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  17189710 tgatgacatgtcatcttacattattcttagcatgttttt 17189748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 19154915 - 19154877
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  19154915 tgatgacaggtcatcttacgttattcttagcatgttttt 19154877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 20754314 - 20754276
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  20754314 tgatgacaggtcatcttacgttattcttagcatgttttt 20754276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 10611758 - 10611713
Alignment:
Q  361 taggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||||||||||| ||  ||||||||||||||||||||||    
T  10611758 taggttttagcagcaaaaaggatgagtattagaacgattgcctatg 10611713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 8977515 - 8977567
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| ||| ||||||||||| | ||||||||    
T  8977515 ttttcagtaggttttagcagcaaaaaggaggagtattagaacaactgcctatg 8977567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 358
Target Start/End: Complemental strand, 9918258 - 9918226
Alignment:
Q  326 catgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||| ||||||||||    
T  9918258 catgtcatcttacgttattcttgacatgttttt 9918226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 358
Target Start/End: Complemental strand, 9926170 - 9926138
Alignment:
Q  326 catgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||| ||||||||||    
T  9926170 catgtcatcttacgttattcttgacatgttttt 9926138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 20577588 - 20577560
Alignment:
Q  320 tgatgacatgtcatcttacgttattctta 348  Q
    |||||||||||||||||||||||||||||    
T  20577588 tgatgacatgtcatcttacgttattctta 20577560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 26249073 - 26249113
Alignment:
Q  318 gttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||| ||||||||||||||||| || |||||||||    
T  26249073 gttgatgacaggtcatcttacgttattcatagcatgttttt 26249113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 402
Target Start/End: Original strand, 39270317 - 39270365
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcc 402  Q
    ||||||||| | |||||||| ||||| ||| ||||||||||||||||||    
T  39270317 tttttagtaagttttagcagtaaaaaggaggagtattagaacgattgcc 39270365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 4876 - 4824
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  4876 ttttcagtaggttttagcagcaaaaaggaggagtattagaacgattgcctatg 4824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 95664 - 95624
Alignment:
Q  366 tttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  95664 tttagcagcaaaaaagaggagtattagaacgattgcctatg 95624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 20252 - 20349
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt-----------agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||||||| |||||||||||||||||||| |||||||||           |||||||  |||||||||||| ||| ||||||||||||||||||||||    
T  20252 tgatgacaagtcatcttacgttattcttagcatgtttttcaattttatttagtaggaaatagcagcaaaaaggaggagtattagaacgattgcctatg 20349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 11252175 - 11252226
Alignment:
Q  355 ttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||||||||||||  |||||| || ||||||||||||||||||||||    
T  11252175 ttttagtaggatttagcaaaaaaaaaaaggagtattagaacgattgcctatg 11252226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 12616811 - 12616773
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  12616811 tgatgacatgtcatcttacgtaattcttaacatgttttt 12616773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 17277942 - 17277904
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  17277942 tgatgacatgtcatcttacgttattcttagcatgttttt 17277904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 8968072 - 8968109
Alignment:
Q  321 gatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||||||||||||||||||| |||||||||    
T  8968072 gatgacatgtcatcttacgttattcttagcatgttttt 8968109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 15166520 - 15166471
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcct 403  Q
    |||| |||||| |||||||||||||| ||| |||||||||||||||||||    
T  15166520 ttttcagtaggttttagcagcaaaaacgaggagtattagaacgattgcct 15166471  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 45561715 - 45561666
Alignment:
Q  193 aattcaataatatttgtgtaactttgatcttactttggagctattttact 242  Q
    |||||||||||||||||| ||||||| ||||||| | |||||||||||||    
T  45561715 aattcaataatatttgtgcaactttggtcttactctagagctattttact 45561666  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 7583844 - 7583792
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| ||| ||||||||||| ||||||||||    
T  7583844 ttttcagtaggttttagcagcaaaaaggaggagtattagaacaattgcctatg 7583792  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 14573547 - 14573504
Alignment:
Q  318 gttgatgacatgtcatcttacgttattcttaacatgtttttagt 361  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||    
T  14573547 gttgatgacatatcatcttacgttattcttagcatatttttagt 14573504  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 17335355 - 17335452
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt-----------agtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||||||||||||||||||||||  |||||||||           |||| | ||||| |||||||| ||| ||||||||||||||||||||||    
T  17335355 tgatgacatgtcatcttacgttattcttggcatgtttttcagtcattttcagtaagttttagaagcaaaaaggaggagtattagaacgattgcctatg 17335452  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 17711358 - 17711307
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctat 405  Q
    |||| |||||| |||||| ||||||| ||| |||||||||||||||||||||    
T  17711358 ttttcagtaggttttagctgcaaaaatgaggagtattagaacgattgcctat 17711307  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 11782589 - 11782551
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  11782589 tgatgataggtcatcttacgttattcttaacatgttttt 11782551  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 25025203 - 25025165
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  25025203 tgatgacaggtcatcttacgttattcttagcatgttttt 25025165  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 19556541 - 19556578
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgtttt 357  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  19556541 tgatgacaggtcatcttacgttattcttagcatgtttt 19556578  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 19603868 - 19603941
Alignment:
Q  321 gatgacatgtcatcttacgttattcttaacatg-tttttagtaggatttagcagcaaaaaagagaagtattaga 393  Q
    |||||||  |||||||||||||||| || |||| |||| |||||| ||||| |||||||| ||| |||||||||    
T  19603868 gatgacagatcatcttacgttattcctagcatgattttcagtaggttttagtagcaaaaaggaggagtattaga 19603941  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 22171793 - 22171748
Alignment:
Q  361 taggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||||||||||| ||| |||||||||| |||||||||||    
T  22171793 taggttttagcagcaaaaaggaggagtattagaatgattgcctatg 22171748  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 25096394 - 25096357
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgtttt 357  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  25096394 tgatgacatgtcatcttacgttgttcttagcatgtttt 25096357  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 12836072 - 12836108
Alignment:
Q  322 atgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  12836072 atgacatttcatcttacgttattcttagcatgttttt 12836108  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 18750876 - 18750824
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    |||| |||||| |||||||||||||| ||| ||||||||| | ||||||||||    
T  18750876 ttttcagtagggtttagcagcaaaaaggaggagtattagagcaattgcctatg 18750824  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 21413919 - 21413983
Alignment:
Q  62 ttgttgagataaatcacacaatcctttttaagttgacgttttaatgaaaacaaactcattcgaat 126  Q
    |||||||||||| ||||| | ||| ||||||||||| |||||||||| || ||||| ||| ||||    
T  21413919 ttgttgagataattcacaaattccattttaagttgaagttttaatgacaataaacttatttgaat 21413983  T

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Target: scaffold0043 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 88436 - 88474
Alignment:
Q  320 tgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  88436 tgatgacatgtcatcttacgttattcttagcatgttttt 88474  T

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Target: scaffold0451 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 5782 - 5730
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||||||||||| |||||||| ||| ||||||||||| |||| |||||    
T  5782 tttttagtaggatttagaagcaaaaaggaggagtattagaacaattgtctatg 5730  T

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Target: scaffold0555 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 6551 - 6512
Alignment:
Q  319 ttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  6551 ttgatgacatgttatcttacgttattcttagcatgttttt 6512  T

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Target: scaffold0032 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 92873 - 92924
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctat 405  Q
    ||||||||||| |||||||||||||||||| | ||||||| | |||||||||    
T  92873 tttttagtagggtttagcagcaaaaaagaggaatattagagccattgcctat 92924  T

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Target: scaffold0032; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 92826 - 92866
Alignment:
Q  318 gttgatgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||||||| || ||||||||||||||||| |||||||||    
T  92826 gttgatgacaagttatcttacgttattcttagcatgttttt 92866  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 243829 - 243872
Alignment:
Q  318 gttgatgacatgtcatcttacgttattcttaacatgtttttagt 361  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||    
T  243829 gttgatgacatatcatcttacgttattcttagcatatttttagt 243872  T

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Target: scaffold0386 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 4874 - 4910
Alignment:
Q  322 atgacatgtcatcttacgttattcttaacatgttttt 358  Q
    |||||| |||||||||||||||||||| |||||||||    
T  4874 atgacaagtcatcttacgttattcttagcatgttttt 4910  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 41391 - 41339
Alignment:
Q  354 tttttagtaggatttagcagcaaaaaagagaagtattagaacgattgcctatg 406  Q
    ||||||||||| |||| |||||||| |||| ||||||||| | ||||||||||    
T  41391 tttttagtaggttttaccagcaaaacagaggagtattagatcaattgcctatg 41339  T

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