View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20222_high_15 (Length: 398)
Name: NF20222_high_15
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 942195 - 941805
Alignment:
| Q |
1 |
caagccaccataattggtaatgaaagtcgaacaaaacatatttcgactta---------gtatcttctctaaattccaaaatcaattaaaccaagaaatg |
91 |
Q |
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| T |
942195 |
caagccaccataattggtaatgaaagtcgaacaaaacatatttcgacttaaacagttaagtatcttctctaaattccaaaatcaattaaaccaagaaatg |
942096 |
T |
|
| Q |
92 |
aatggaaacaaatgtcagatgcggaccaattgtgtatcgaggtccaaaataaattttaaagactcattagagaatcttgattaatttcttctaattgttt |
191 |
Q |
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| T |
942095 |
aatggaaacaaatgtcaaatgcggaccaaatgtgtatcgaggtccaaaataaattttaaagactcattagagaatcttgattaatttcttctaattgttt |
941996 |
T |
|
| Q |
192 |
gcctcaatgttattcttattcttgcatggattagggttttaataaccttagtgagaacat-ttttggttcgaagaattcgagagttagtgaaaaaggact |
290 |
Q |
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| T |
941995 |
gcctcaatgttattcttattcttgcatggattagggttttaataaccttagtgagaacattttttggttcgaagaattcgagagttagtgaaaaaggact |
941896 |
T |
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| Q |
291 |
agtatgtcaatttcaaccatattggtgcgagggaaattttttgtgtagattgacttataaacttcagtcttatcttgaacaatgtggatct |
381 |
Q |
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| T |
941895 |
agtatgtcaatttcaaccatattggtgcgagggaaattttttgtgtagattgacttataaacttcagtcttatcttgaacaatgtggatct |
941805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 38037615 - 38037573
Alignment:
| Q |
8 |
ccataattggtaatgaaagtcgaacaaaacatatttcgactta |
50 |
Q |
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| T |
38037615 |
ccataattggtaatcaaaatcgaacaaaacatatttcgactta |
38037573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 7129279 - 7129327
Alignment:
| Q |
2 |
aagccaccataattggtaatgaaagtcgaacaaaacatatttcgactta |
50 |
Q |
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| T |
7129279 |
aagcctccagaattggtaatcaaagtcgaataaaacatatttcgactta |
7129327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 12343334 - 12343371
Alignment:
| Q |
8 |
ccataattggtaatgaaagtcgaacaaaacatatttcg |
45 |
Q |
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| T |
12343334 |
ccataattggtaatcaaagtcgaacaaaacttatttcg |
12343371 |
T |
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