View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20222_high_24 (Length: 288)
Name: NF20222_high_24
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_high_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 278
Target Start/End: Complemental strand, 13066164 - 13065890
Alignment:
| Q |
10 |
aagaaaatgttctctcataaaatttataactgacgatactcattccaatccttcatcaatcttttaaagcatcttcttgaatcaagattatcaaaagtga |
109 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13066164 |
aagaaaatgttctctcatcaaatttataactgacgatactcattccaatccttcatcaatcttttaaagcatcttcttgaatcaagattatcaaaagtga |
13066065 |
T |
|
| Q |
110 |
agatttggctaacctttgggttctataaatgatgaaaattgataataccacaataacattcaaatgtctgcgagtctaagatgttt------tatatata |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || ||||| |
|
|
| T |
13066064 |
agatttggctaacctttgggttctataaatgatgaaaattgataataccacaataacattcaaatttctgcgagtctaacatgtttaatatataaatata |
13065965 |
T |
|
| Q |
204 |
aatgtatctaaataagtttttagcagacttcaaattctattcactaccaatgttgaaaaacttttacatagacat |
278 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13065964 |
aatgtatctaaataaatttttagcagacttcaaattctattcactaccaatgttgaaaaacttttacatagacat |
13065890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University