View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20222_high_25 (Length: 286)
Name: NF20222_high_25
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 53676309 - 53676576
Alignment:
| Q |
1 |
ctgtgaaggcgttatgtagaaataatattattgtccaattttaaagtttatcttttaacattttatttattttctcttcactgcgtgtttcttagcttct |
100 |
Q |
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| T |
53676309 |
ctgtgaaggcgttatgtagaaataatattattgtccaattttaaagtttatcttttaacattttatttattttctcttgactgcgtgtttcttagcttct |
53676408 |
T |
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| Q |
101 |
acaaagagggttaagtgtgacaaacaatattttaaaactaagttatttgattcattgagtctctctgatataaagtttacaaattacaagtgatatttac |
200 |
Q |
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| T |
53676409 |
acaaagaggtttaagtgtcacaaacaatattttaaaactaagttatttgattcattgagtctctctgatatatagtttacaaattacaagtgatatttac |
53676508 |
T |
|
| Q |
201 |
agacaaatgtgtttgagcctaaatcctattagccatgatcatgacctataaagatcgtgtcctaattg |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
53676509 |
agacaaatgtgtttgagcctaaatcctattagccatgatcatgacatataaagatcgtgtcctaattg |
53676576 |
T |
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