View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20222_high_28 (Length: 250)
Name: NF20222_high_28
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_high_28 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 942496 - 942253
Alignment:
| Q |
9 |
gaagaatatttaacggcataaaccacctatataattaattcatcaaagcacccctcaaaaaataaatcatcaaagcaattaaacattcnnnnnnnaaagg |
108 |
Q |
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| T |
942496 |
gaagaatatttaacggcataaaccacctatataattaattcattaaagcacccctcaaaaaataaatcatcaaagcaattaaacattctttttttaaagg |
942397 |
T |
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| Q |
109 |
ccaaaaagatcacaaatat-ta-nnnnnnnnngagtgaaaaaagagcacaaatatattattaacaaaccaaaacagaccactacaacacaaggtgtacta |
206 |
Q |
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| T |
942396 |
ccaaaaagatcacaaatatatatattttttttgagtgaaaaaagagcacaaatatattattaacaaaccaaaacagaccacagcaacacaaggtgtacta |
942297 |
T |
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| Q |
207 |
aagaatgtatcttagagaaccagagtacaataatagtacaaaag |
250 |
Q |
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| T |
942296 |
aagaatgtctgtcagagaaccaaagtacaataatagtataaaag |
942253 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 38037764 - 38037717
Alignment:
| Q |
164 |
tattaacaaaccaaaacagaccactacaacacaaggtgtactaaagaa |
211 |
Q |
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| T |
38037764 |
tattaacaaaccaaaacataccacttcaacacaaggtatacgaaagaa |
38037717 |
T |
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