View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20222_high_30 (Length: 236)
Name: NF20222_high_30
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_high_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41916268 - 41916482
Alignment:
| Q |
1 |
ttaaataataagtttttatacaaatttatgtgattaatgtgttgaaaattaaaatatctaact-ttttgaatgaataatttctttacttgtggtccttga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41916268 |
ttaaataataagtttttatacaaatttatgggattaatgtgttgaaaattaaaatatctaactcttttgaatgaataatttctttacttgtggtccttga |
41916367 |
T |
|
| Q |
100 |
tgaatttgattagttcactcattagctaaacccaaaacccaaatgtaaaagctcatgccattgcaattaccatatatcaggatactagacactagacact |
199 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41916368 |
tgaatttgattagttcgctcattagct-------aaacccaaatgtaaaagctcatgctattgcaattaccatatatcaggatactagacactagacact |
41916460 |
T |
|
| Q |
200 |
aatcactttatgaggcagtttt |
221 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41916461 |
aatcactttatgaggcagtttt |
41916482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 25331465 - 25331420
Alignment:
| Q |
36 |
aatgtgttgaaaattaaaatatctaactttttgaatgaataatttc |
81 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || ||||||||| |
|
|
| T |
25331465 |
aatgtgttgaaaattaaaatatttaactttttaaaaaaataatttc |
25331420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 30910437 - 30910547
Alignment:
| Q |
1 |
ttaaataataagtttttatacaaatttatgtgattaatgtgttgaaaattaaaatatctaactttttgaatgaataatttctttacttgtggtccttgat |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| |||| || |
|
|
| T |
30910437 |
ttaaataataagtttttataaaaatttatgtaattaatgtgttaaaaattaaaatatttaactttttgaatgaataatttcttaacttgtaacccttaat |
30910536 |
T |
|
| Q |
101 |
gaatttgatta |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
30910537 |
gaatttgatta |
30910547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 9049157 - 9049235
Alignment:
| Q |
1 |
ttaaataataagtttttatacaaatttatgtgattaatgtgttgaaaattaaaatatctaactttttgaatgaataatt |
79 |
Q |
| |
|
||||||||||| |||||||| |||||| ||| ||||||| ||||||||| ||| || |||| |||| || |||||||| |
|
|
| T |
9049157 |
ttaaataataactttttataaaaatttgtgtaattaatgcattgaaaattgaaaaatttaacattttaaaagaataatt |
9049235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 63976 - 63900
Alignment:
| Q |
9 |
taagtttttatacaaatttatgtgattaatgtgttgaaaattaaaatatctaactttttgaatgaataatttcttta |
85 |
Q |
| |
|
||||||||| | ||||||||| |||||||| || ||||||||||| | | ||||||| || |||||||||||||| |
|
|
| T |
63976 |
taagtttttgtcaaaatttatgaaattaatgtattaaaaattaaaatttttgacttttttaaagaataatttcttta |
63900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 37129840 - 37129901
Alignment:
| Q |
22 |
aaatttatgtgattaatgtgttgaaaattaaaatatctaactttttgaatgaataatttctt |
83 |
Q |
| |
|
|||| ||||| |||||||| ||| ||||| |||||| ||||||||| || |||||||||||| |
|
|
| T |
37129840 |
aaatgtatgtaattaatgtcttgtaaattgaaatatttaacttttttaaagaataatttctt |
37129901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University