View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20222_high_5 (Length: 563)
Name: NF20222_high_5
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 475
Target Start/End: Original strand, 4375311 - 4375771
Alignment:
| Q |
10 |
agatgaatatagatagtggctgagtttgatggagaagggaaataatttatgaagctaagtatgaacatctctggcattaaaatgtgtgcaagtgtccaaa |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4375311 |
agatgaatatagatggtggctgagtttgatggagaagggaaataagttatgaag-----tatgaacatctctggcattaaaaagtgtgcaagtgtccaaa |
4375405 |
T |
|
| Q |
110 |
atacggcagtgtctgtaaatatgacatttgtgcgacacttttacgcacattaaacacttctatgtagcttaaaatataaccaaaggattgaagaaattaa |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4375406 |
atacgacagtgtctgtaaatatgacatttgtgcgacacttttacgcacattaaacacttctatgtagcttaaaatataaccaaaggattgaagaaattaa |
4375505 |
T |
|
| Q |
210 |
attcaataacgatatttttaactttcaagtatagcactgtagatagatgaattaagtgaaagtttatcatattttgtttatgaacttttttgtagtgtat |
309 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4375506 |
attcaataatgatatttttaactttcaagtatagcactgtagatagatgaattaagtgaaagtttatcatattttgtttatgaacttttttgtagtgtat |
4375605 |
T |
|
| Q |
310 |
caaattgctcaatttagatgtatgtgtgtttatacatcggtgttgctatcctatatttttaaatataacagtgtcaatgtgtccgtgtctgtatcatgtc |
409 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
4375606 |
caaattgctcaatttagatgtatgcgtgtgtatatatcggtgttgctatcctatatttttaaatacaacagtgtcaacatgttcgtgtctgtatcatgtc |
4375705 |
T |
|
| Q |
410 |
agactgtcagttgtccctgtcggagtcatgcttcatataaaacgagacttgatgagatagaggcat |
475 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
4375706 |
cgactgtcagttgtccgtgtcggagtcatgcttcatataaaacgagcctcgatgagataaaggcat |
4375771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 331
Target Start/End: Original strand, 47954354 - 47954393
Alignment:
| Q |
292 |
aacttttttgtagtgtatcaaattgctcaatttagatgta |
331 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
47954354 |
aacttgtttgtagtgtaacaaattgctcaatttagatgta |
47954393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 21249194 - 21249276
Alignment:
| Q |
248 |
gtagatagatgaattaagtgaaagtttatcatattttgtttatgaacttttttgtagtgtatcaaattgctcaatttagatgt |
330 |
Q |
| |
|
|||||| || |||| | |||||| | || |||||||||||| |||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
21249194 |
gtagatggaagaatcatgtgaaaatataccatattttgttttagaacttttttgtagtgtaccaaattgcccagattagatgt |
21249276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 21253571 - 21253653
Alignment:
| Q |
248 |
gtagatagatgaattaagtgaaagtttatcatattttgtttatgaacttttttgtagtgtatcaaattgctcaatttagatgt |
330 |
Q |
| |
|
|||||| || |||| | |||||| | || |||||||||||| |||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
21253571 |
gtagatggaagaatcatgtgaaaatataccatattttgttttagaacttttttgtagtgtaccaaattgcccagattagatgt |
21253653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 23445081 - 23445134
Alignment:
| Q |
276 |
tcatattttgtttatgaacttttttgtagtgtatcaaattgctcaatttagatg |
329 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
23445081 |
tcatattttgtttaagaacttttttgtagtgtaccaaattgctcaatttcgatg |
23445134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 3803373 - 3803326
Alignment:
| Q |
283 |
ttgtttatgaacttttttgtagtgtatcaaattgctcaatttagatgt |
330 |
Q |
| |
|
||||||| |||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3803373 |
ttgtttaagaacctttttgtagtgtaccaaattgctcaatttagatgt |
3803326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University