View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20222_low_10 (Length: 456)
Name: NF20222_low_10
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 35423720 - 35424151
Alignment:
| Q |
1 |
tgttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35423720 |
tgttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtct |
35423819 |
T |
|
| Q |
101 |
agaaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35423820 |
agaaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttc |
35423919 |
T |
|
| Q |
201 |
attgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35423920 |
attgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaata |
35424019 |
T |
|
| Q |
301 |
ttcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctttctatgatcttannnnnnngctatata |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
35424020 |
ttcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctttctatgatcttattttgttgctataca |
35424119 |
T |
|
| Q |
401 |
tactttaaaatgtctttcatgtgtttgtgacc |
432 |
Q |
| |
|
| ||||||||||||||||||||| ||| |||| |
|
|
| T |
35424120 |
tcctttaaaatgtctttcatgtgcttgcgacc |
35424151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 35376461 - 35376899
Alignment:
| Q |
1 |
tgttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35376461 |
tgttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctggaaaacctgttgcatggtaacgaagatcatgagtct |
35376560 |
T |
|
| Q |
101 |
agaaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35376561 |
agaaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttc |
35376660 |
T |
|
| Q |
201 |
attgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaata |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35376661 |
attgtgatgttaagccaagcaatgttcttcttgatgatgacggtgtggcccacttaggagactttggcttagctaggttcctccatggagctacagaata |
35376760 |
T |
|
| Q |
301 |
ttcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctttctatgatcttannnnnnngctatata |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
35376761 |
ttcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctttctatgatcttattttgttgctataca |
35376860 |
T |
|
| Q |
401 |
tactttaaaatgtctttcatgtgtttgtgaccttccttt |
439 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35376861 |
tcctttaaaatgtctttcatgtgcttgtgaccttccttt |
35376899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 35754869 - 35755236
Alignment:
| Q |
1 |
tgttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtct |
100 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||||||||||||||| | | ||||| ||| ||||| ||||||| | ||| |||| ||| |
|
|
| T |
35754869 |
tgttgattataatggtgaagatttcaaagctattgtttttgagttcatgtcaaatgggagtcttgaaaagttgttgcacgataatgaagg------gtca |
35754962 |
T |
|
| Q |
101 |
agaaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttc |
200 |
Q |
| |
|
||||| | |||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
35754963 |
ggaaattttaatctcaacctcacacaaaggttagacattgctcttgatgtagctcatgcattggattatcttcacaatgatacagaacaagtcgtagttc |
35755062 |
T |
|
| Q |
201 |
attgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaata |
300 |
Q |
| |
|
| |||||| |||| |||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||| || | ||||||||||||||| | |
|
|
| T |
35755063 |
actgtgatattaagccaagcaatgttcttcttgatgatgaaattgtagcccacttgggagactttggcctagctaggctcattcatggagctacagaaca |
35755162 |
T |
|
| Q |
301 |
ttcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttcttt |
374 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35755163 |
ttcaagtaaagatcaagttaattcctctacaattaagggaactataggatatgttcctcctggtaaagttcttt |
35755236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 35410728 - 35411094
Alignment:
| Q |
1 |
tgttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtct |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||||||||| ||||||| ||||||||||||||| | ||||||| |||||||| |||| |
|
|
| T |
35410728 |
tgttgattataatggtgaagagttcaaggctattgtttttgagttaatgcctaatgggaatctagaaaagtttttgcatgataacgaagg------gtct |
35410821 |
T |
|
| Q |
101 |
agaaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttc |
200 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| || |||||||||||| | ||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
35410822 |
gaaaatcataatctcaacctcacacaaaggttagacattgctcttgatgtagctcatgcacttgattatcttcacaatgagacagagcaagctgtagttc |
35410921 |
T |
|
| Q |
201 |
attgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaata |
300 |
Q |
| |
|
| |||||| |||| || ||||| ||||||||||| |||||| ||| ||||||| |||||||||||| | |||||| || | | |||| | ||||| | |
|
|
| T |
35410922 |
actgtgatcttaagccgagcaacgttcttcttgacgatgactttgtagcccacttgggagactttggcttggctaggctcattcttggaaccacagagca |
35411021 |
T |
|
| Q |
301 |
ttcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctt |
373 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35411022 |
ttcaagtaaagatcaagttattttttctacaattaaaggaactataggatatattcctcctggtaaagctctt |
35411094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 35386067 - 35386433
Alignment:
| Q |
1 |
tgttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtct |
100 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||||||||||||||| | | || || ||| ||||| | ||||| ||| |||| |||| |
|
|
| T |
35386067 |
tgttgattataagggtgaagatttcaaggctattgtttttgagttcatgtcaaatgagagtcttgaaaagtttttgcacaataatgaagg------gtct |
35386160 |
T |
|
| Q |
101 |
agaaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttc |
200 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||||| || |||||||||||| | |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35386161 |
gaaaatcataatctcaacctcacataaaggttagacattgctcttgatgtagctcatgcacttgattatcttcacaatgatacagagcaagccgtagttc |
35386260 |
T |
|
| Q |
201 |
attgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaata |
300 |
Q |
| |
|
| |||||| |||| |||||||| ||||||||||| |||||| ||| ||||||| |||||||||||| | |||||| || | | |||| | ||||| | |
|
|
| T |
35386261 |
actgtgatcttaagccaagcaacgttcttcttgacgatgactttgtagcccacttgggagactttggcttggctaggatcattcttggaaccacagagca |
35386360 |
T |
|
| Q |
301 |
ttcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctt |
373 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35386361 |
ttcaagtaaagatcaagttatttcctctactattaaaggaactataggatatattcctcctggtaaagttctt |
35386433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 3 - 378
Target Start/End: Original strand, 35366917 - 35367286
Alignment:
| Q |
3 |
ttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctag |
102 |
Q |
| |
|
|||||||||| |||||||| || ||||| |||||||||||||||||||||| || | ||||||||| || |||||| |||||||| |||| | |
|
|
| T |
35366917 |
ttgattataagggtgaagagttcaaggctattgtttttgagttcatgcctaagggaagtctagaaaagcttctgcatgataacgaagg------gtctgg |
35367010 |
T |
|
| Q |
103 |
aaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcat |
202 |
Q |
| |
|
||||| ||||||| ||| ||| || | ||||||||||| || |||||||||||| | |||||||||||||||| ||||||| || ||||||| |
|
|
| T |
35367011 |
aaatcataatctcagcctcagacacagagttgacattgctcttgatgtagctcatgcactcgattatcttcacaatggtacagagaaatccatagttcac |
35367110 |
T |
|
| Q |
203 |
tgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatatt |
302 |
Q |
| |
|
|||||| |||| || ||||| |||||||| || |||||| ||| ||||||| |||||||||||| |||||||| || | | |||| | | ||| ||| |
|
|
| T |
35367111 |
tgtgatattaagccgagcaacgttcttctggacgatgacactgtagcccacttgggagactttggcttagctaggctcattcttggaaccagagaccatt |
35367210 |
T |
|
| Q |
303 |
caagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctttctat |
378 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35367211 |
caagtaaagatcaagttaattcttccacaattaagggaactataggatatgttcctcctggtaaagttctttctat |
35367286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 3 - 367
Target Start/End: Original strand, 35437070 - 35437428
Alignment:
| Q |
3 |
ttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctag |
102 |
Q |
| |
|
|||||||||||||||||| ||| ||||| || |||||||| |||||||||| |||| ||||||| | ||||||| ||| ||| ||| ||||||||| |
|
|
| T |
35437070 |
ttgattataatggtgaagttttcaaggctatagtttttgaattcatgcctatggggagtctagaaggcttgttgcacaataatgaacatcttgagtctag |
35437169 |
T |
|
| Q |
103 |
aaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcat |
202 |
Q |
| |
|
|||||| |||| ||| |||||||||| |||||||||| ||||| ||||||||||||||||||||| || || | | ||| ||||||||| |
|
|
| T |
35437170 |
aaatctaaatc------tcagacaaaggttaagtgttgctctcgatgtagcccatgcattggattatcttcaccataattcccatgaagctgtagttcac |
35437263 |
T |
|
| Q |
203 |
tgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatatt |
302 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| || |||||| | | | |||||||||| ||||| |||| |||||||| |||| ||||||| || |
|
|
| T |
35437264 |
tgtgatattaagccaagtaatgttcttctcgacgatgacattattgcttacttaggagattttgggttagcaaggttccttaatggggctacagggagtt |
35437363 |
T |
|
| Q |
303 |
caagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaa |
367 |
Q |
| |
|
| |||||| ||||||||| ||| | ||||| ||||||| ||||||||| |||| || |||||| |
|
|
| T |
35437364 |
ccagtaaagatcaagttagttcagctgcaattcaaggaaccataggatatgttcccccaggtaaa |
35437428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 35370301 - 35370408
Alignment:
| Q |
1 |
tgttgattataatggtgaagatttt-aaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtc |
99 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||||||||||||||| | ||||| | |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
35370301 |
tgttgattataatggtgaagagttccaaggctattgtttttgagttcatgcccaatgggagtttagaaaacatgttgcatggtaacgaagaacatgagtc |
35370400 |
T |
|
| Q |
100 |
tagaaatc |
107 |
Q |
| |
|
|||||||| |
|
|
| T |
35370401 |
tagaaatc |
35370408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 35388441 - 35388544
Alignment:
| Q |
122 |
acacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagca |
221 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||| | |||||||||||||||||| || ||||||| |||||||||||||||| |||| |||| || |
|
|
| T |
35388441 |
acacaaaggttaagtattgctctcaatgtagctcgcacgttggattatcttcacaataattttgagcaagctgtagttcattgtgatattaagccaaaca |
35388540 |
T |
|
| Q |
222 |
atgt |
225 |
Q |
| |
|
|||| |
|
|
| T |
35388541 |
atgt |
35388544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 10716947 - 10716904
Alignment:
| Q |
198 |
ttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
241 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
10716947 |
ttcattgtgatcttaagccaagcaatgtccttcttgatgatgac |
10716904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 10410131 - 10409758
Alignment:
| Q |
1 |
tgttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtct |
100 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||| | | |||||||| ||||||||||| |||| || |||||| |
|
|
| T |
10410131 |
tgttgattataaaggtgaagatttcaaggctattgtttttgagttcatgcctaatgggagtttggaaaaccttttgcatggtaataaagaacacgagtct |
10410032 |
T |
|
| Q |
101 |
agaaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||||||||| || |||| |
|
|
| T |
10410031 |
agaaatctgaatctcaatttcacacaaaggttagacattgttctcaacgtagctcatgcattggattatcttcacattgatgcagagcaagtggtggttc |
10409932 |
T |
|
| Q |
201 |
attgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaata |
300 |
Q |
| |
|
|| ||| ||||||||||||||||||||||| ||||||||| ||| | |||||||||||||||||| |||||||| | | | ||||||||||||| | |
|
|
| T |
10409931 |
atagtggcgttaaaccaagcaatgttcttctcgatgatgacaatgtagctcacttaggagactttggcttagctaggctaattcgtggagctacagaaca |
10409832 |
T |
|
| Q |
301 |
ttcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttcttt |
374 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
10409831 |
ttcaagtaaagatcaagttatttcctctacaattaagggaactataggatatgttcctcccggtaaagttcttt |
10409758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 10415822 - 10415456
Alignment:
| Q |
1 |
tgttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||| ||| ||||| | |||| | |||||||| |||| |
|
|
| T |
10415822 |
tgttgattataatggtgaagatttcaaggctattgtttttgagttcatgcctaaggggagtctggaaaagattctgcacgataacgaagg------gtct |
10415729 |
T |
|
| Q |
101 |
agaaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttc |
200 |
Q |
| |
|
||| || ||||||| | |||||||||||||||| ||||| || ||||||||||| | |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10415728 |
ggaattcataatctcagcctggcacaaaggttagacatcgctcttgatctagctcatgcacttgattatcttcacaatgatacagagcaagccgtagttc |
10415629 |
T |
|
| Q |
201 |
attgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaata |
300 |
Q |
| |
|
| ||||||||||| ||||||| ||||||||||| ||||||| ||| ||||||| |||||||||||| |||||||| || | | |||||| ||||| | |
|
|
| T |
10415628 |
actgtgatgttaagtcaagcaacgttcttcttgacgatgacgttgtagcccacttgggagactttggcttagctaggctcattcttggagccacagagca |
10415529 |
T |
|
| Q |
301 |
ttcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctt |
373 |
Q |
| |
|
|||||||||| ||||||| |||||||| || ||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
10415528 |
ttcaagtaaagatcaagtcatttcctctactattaaaggaactataggatatattcctactggtaaagctctt |
10415456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 2 - 378
Target Start/End: Complemental strand, 10420708 - 10420338
Alignment:
| Q |
2 |
gttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtcta |
101 |
Q |
| |
|
||||||||||| |||||||| || ||||| |||||||||||||||||||||| |||| ||||||||| || |||| | ||| |||| |||| |
|
|
| T |
10420708 |
gttgattataagggtgaagagttcaaggctattgtttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataaagaagg------gtctg |
10420615 |
T |
|
| Q |
102 |
gaaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttca |
201 |
Q |
| |
|
||| || ||||||| ||| ||||||| | ||||||||||| || |||||||||||| | ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
10420614 |
gaattcataatctcagcctcagacaaagggttgacattgctcttgatgtagctcatgcacttaattatcttcacaatggtacagagcaagccatagttca |
10420515 |
T |
|
| Q |
202 |
ttgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatat |
301 |
Q |
| |
|
|||||| |||| || ||||| |||||||| || |||||| ||| | ||||| |||||||||||| |||||||| || | | |||| | | ||| || |
|
|
| T |
10420514 |
ctgtgatattaagccgagcaacgttcttctggacgatgacattgtagctcacttgggagactttggcttagctaggctcattcttggaaccagagaccat |
10420415 |
T |
|
| Q |
302 |
tcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctttctat |
378 |
Q |
| |
|
||||||||| ||||||||| ||| |||||||| || |||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10420414 |
tcaagtaaagatcaagttaattcttccacaatcaagggaagtataggatatgttcctcctggtaaagttctttctat |
10420338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 39875900 - 39875856
Alignment:
| Q |
197 |
gttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
241 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||||| |||||| |
|
|
| T |
39875900 |
gttcattgtgatttaaaaccaagcaatgtccttcttgacgatgac |
39875856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 39884023 - 39883979
Alignment:
| Q |
197 |
gttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
241 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||||| |||||| |
|
|
| T |
39884023 |
gttcattgtgatttaaaaccaagcaatgtccttcttgacgatgac |
39883979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 39890977 - 39890933
Alignment:
| Q |
197 |
gttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
241 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||||| |||||| |
|
|
| T |
39890977 |
gttcattgtgatttaaaaccaagcaatgtccttcttgaagatgac |
39890933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 29623263 - 29622893
Alignment:
| Q |
1 |
tgttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtct |
100 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||| | || ||||||||| ||||||| | ||| |||| || ||| |
|
|
| T |
29623263 |
tgttgattataaaggtgaagatttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaag-----ga-tct |
29623170 |
T |
|
| Q |
101 |
agaaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttc |
200 |
Q |
| |
|
||| | |||||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
29623169 |
ggaagccataatctcaacctcacacaaaggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttc |
29623070 |
T |
|
| Q |
201 |
attgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaata |
300 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||| || | ||||| | || | | |
|
|
| T |
29623069 |
actgtgatgttaagccaagcaatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattaatggatcctcaaacca |
29622970 |
T |
|
| Q |
301 |
ttcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctttctat |
378 |
Q |
| |
|
||||||||| ||||| ||| ||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
29622969 |
ttcaagtaatgatcaaattacttcttccacaattaagggaactataggatatgttcctcctggt-aagttctttctat |
29622893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 5e-66; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 5 - 375
Target Start/End: Original strand, 30626130 - 30626493
Alignment:
| Q |
5 |
gattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaa |
104 |
Q |
| |
|
|||||||| ||||| || || ||||| |||||||||||||||||||||| |||| ||||||||| || |||| | ||||||||| |||| ||| |
|
|
| T |
30626130 |
gattataagggtgacgagttcaaggctattgtttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaaga------gtctggaa |
30626223 |
T |
|
| Q |
105 |
atctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattg |
204 |
Q |
| |
|
|| ||||||| ||||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||| ||| ||| | ||||||||||| || |
|
|
| T |
30626224 |
ttcataatctcagcctcacacaaagggttgacattgctcttgatgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcaatg |
30626323 |
T |
|
| Q |
205 |
tgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattca |
304 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| || ||||||| ||||||||||| | || ||||| | |||||||| |||| ||||||| |
|
|
| T |
30626324 |
tgatgtgaaaccaaacaatgttcttcttgatgatgacatggtagcccacttgggagactttggattggcaaggttaattcatggagccacagcatattca |
30626423 |
T |
|
| Q |
305 |
agtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctttc |
375 |
Q |
| |
|
||| | ||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
30626424 |
agtgtagatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggt-aagttctttc |
30626493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 5 - 375
Target Start/End: Original strand, 30663081 - 30663444
Alignment:
| Q |
5 |
gattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaa |
104 |
Q |
| |
|
|||||||| ||||| || || ||||| |||||||||||||||||||||| |||| ||||||||| || |||| | ||||||||| |||| ||| |
|
|
| T |
30663081 |
gattataagggtgacgagttcaaggctattgtttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaaga------gtctggaa |
30663174 |
T |
|
| Q |
105 |
atctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattg |
204 |
Q |
| |
|
|| ||||||| ||||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||| ||| ||| | ||||||||||| || |
|
|
| T |
30663175 |
ttcataatctcagcctcacacaaagggttgacattgctcttgatgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcactg |
30663274 |
T |
|
| Q |
205 |
tgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattca |
304 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| || ||||||| ||||||||||| | || ||||| | |||||||| |||| ||||||| |
|
|
| T |
30663275 |
tgatgtgaaaccaaacaatgttcttcttgatgatgacatggtagcccacttgggagactttggattggcaaggttaattcatggagccacagcatattca |
30663374 |
T |
|
| Q |
305 |
agtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctttc |
375 |
Q |
| |
|
||| | ||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
30663375 |
agtgtagatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggt-aagttctttc |
30663444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 5 - 375
Target Start/End: Original strand, 30671761 - 30672124
Alignment:
| Q |
5 |
gattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaa |
104 |
Q |
| |
|
|||||||| ||||| || || ||||| |||||||||||||||||||||| |||| ||||||||| || |||| | ||||||||| |||| ||| |
|
|
| T |
30671761 |
gattataagggtgacgagttcaaggctattgtttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaaga------gtctggaa |
30671854 |
T |
|
| Q |
105 |
atctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattg |
204 |
Q |
| |
|
|| ||||||| ||||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||| ||| ||| | ||||||||||| || |
|
|
| T |
30671855 |
ttcataatctcagcctcacacaaagggttgacattgctcttgatgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcactg |
30671954 |
T |
|
| Q |
205 |
tgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattca |
304 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| || ||||||| ||||||||||| | || ||||| | |||||||| |||| ||||||| |
|
|
| T |
30671955 |
tgatgtgaaaccaaacaatgttcttcttgatgatgacatggtagcccacttgggagactttggattggcaaggttaattcatggagccacagcatattca |
30672054 |
T |
|
| Q |
305 |
agtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctttc |
375 |
Q |
| |
|
||| | ||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
30672055 |
agtgtagatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggt-aagttctttc |
30672124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 17923410 - 17923367
Alignment:
| Q |
198 |
ttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
241 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
17923410 |
ttcattgtgatctaaaaccaagcaatgtccttcttgatgatgac |
17923367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 1153814 - 1154056
Alignment:
| Q |
14 |
ggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatc |
113 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||| |||| ||||||||| ||||||||| || |||| |||| ||||| |||| |
|
|
| T |
1153814 |
ggtgaagatttcaaggctattgtttttgagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagg------gtctgaaaatcacaatc |
1153907 |
T |
|
| Q |
114 |
tcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaa |
213 |
Q |
| |
|
|||| ||||| ||||| |||| ||||||| || ||||||||||| | |||| |||||||||||||||| |||||||| |||||| |||||| |||| |
|
|
| T |
1153908 |
tcaagctcacaaaaagggtagattttgctcttgatatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaa |
1154007 |
T |
|
| Q |
214 |
accaagcaatgttcttcttgatgatgacggtgtgacccacttaggagac |
262 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
1154008 |
gccaagcaatgttcttcttgatgatgacaatgtagcccacttgggagac |
1154056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 1154061 - 1154105
Alignment:
| Q |
329 |
acaattaaaggaactataggatatattcctcctggtaaagttctt |
373 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1154061 |
acaattaaaggaacaataggatatattcctcctggtaaagttctt |
1154105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 248 - 374
Target Start/End: Original strand, 15294045 - 15294171
Alignment:
| Q |
248 |
acccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactatag |
347 |
Q |
| |
|
|||||||| |||||||||||| | |||||| || | |||||| | | ||| ||||||||||| || |||||||| |||| | |||||||||||||||| |
|
|
| T |
15294045 |
acccacttgggagactttggcttggctaggctcattcatggaaccatagagcattcaagtaaagataaagttattgcctctaagattaaaggaactatag |
15294144 |
T |
|
| Q |
348 |
gatatattcctcctggtaaagttcttt |
374 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
15294145 |
gatatattcctcctggtaaagttcttt |
15294171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 248 - 374
Target Start/End: Original strand, 15474414 - 15474540
Alignment:
| Q |
248 |
acccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactatag |
347 |
Q |
| |
|
|||||||| |||||||||||| | |||||| || | |||||| | | ||| ||||||||||| || |||||||| |||| | |||||||||||||||| |
|
|
| T |
15474414 |
acccacttgggagactttggcttggctaggctcattcatggaaccatagagcattcaagtaaagataaagttattgcctctaagattaaaggaactatag |
15474513 |
T |
|
| Q |
348 |
gatatattcctcctggtaaagttcttt |
374 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
15474514 |
gatatattcctcctggtaaagttcttt |
15474540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 13564816 - 13564895
Alignment:
| Q |
150 |
tagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttctt |
229 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||| |||||| |
|
|
| T |
13564816 |
tagcttatgcattggattatcttcacaatgatgtagagcaagccttaggtcattgtgatgttaagccgagcaacgttctt |
13564895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 13564687 - 13564762
Alignment:
| Q |
3 |
ttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgca |
78 |
Q |
| |
|
||||| |||| ||||| ||||| ||||| |||||||||||||||||| ||| ||| | ||||||||| ||||||| |
|
|
| T |
13564687 |
ttgataataagggtgacgatttcaaggctattgtttttgagttcatgtctaatggtagtctagaaaagatgttgca |
13564762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 12932481 - 12932524
Alignment:
| Q |
198 |
ttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
241 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
12932481 |
ttcattgtgatctaaaaccaagcaatgtccttcttgatgatgac |
12932524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 12948846 - 12948889
Alignment:
| Q |
198 |
ttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
241 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
12948846 |
ttcattgtgatctaaaaccaagcaatgtccttcttgatgatgac |
12948889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 12907394 - 12907435
Alignment:
| Q |
200 |
cattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
241 |
Q |
| |
|
||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
12907394 |
cattgtgatctaaaaccaagcaatgtccttcttgatgatgac |
12907435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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