View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20222_low_13 (Length: 441)

Name: NF20222_low_13
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20222_low_13
NF20222_low_13
[»] chr1 (1 HSPs)
chr1 (13-441)||(10559538-10559965)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 441
Target Start/End: Original strand, 10559538 - 10559965
Alignment:
Q  13 tatagggcacttgtgtatggatgcaaaatcaaattgcaaagaaaaaagtggtgcatgagcgattgcaagtatcacaacaacaaactaggatgagtcaaaa 112  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10559538 tatagggcacttgcgtatggatgcaaaatcaaattgcaaaaaaaaaagtggtgcatgagcgattgcaagtatgacaacaacaaactaggatgagtcaaaa 10559637  T
Q  113 tgaatctaatatttgaaatttggcgtgtgaacgcgatcgccaacacgaaaaacggatccattcacttcaaaccgagcacgacgaaagtgacaacaacaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||| |||||||||    
T  10559638 tgaatctaatatttgaaatttggcgtgtgaacgcgatcgccaacacgaaaa-cggatccattcaccacaaaccgagcacgacgaaagtgaaaacaacaag 10559736  T
Q  213 cataaacgactatgaggcaacctgagatgcagaagagcatccagttcgtgaagccttggctcttttgagcaataaaaaccagagacaaaaccttcagcgc 312  Q
    |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  10559737 cataaacgactatgaggcaacctgagatgcagaagaacatcaagctcgtgaagccttggctcttttgagcaataaaaaccagaggcaaaaccttcggcgc 10559836  T
Q  313 tcccataaacccactaaaacaaccaatcaaggagcatcgtgaatataccaatagtcacggaagccacgaataagtcggcgacgaaaaaggagcagtgtaa 412  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10559837 tcccataaacccactgaaacaaccaatcaaggagcatcgtgaatataccaatagtcacggaagccacgaataagtcggcgacgaaaaaggagcagcgtaa 10559936  T
Q  413 atataccaatagttttagaaacacggcga 441  Q
    |||||||||||||||||||||||| ||||    
T  10559937 atataccaatagttttagaaacacagcga 10559965  T

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