View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20222_low_14 (Length: 423)

Name: NF20222_low_14
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20222_low_14
NF20222_low_14
[»] chr4 (3 HSPs)
chr4 (137-400)||(10634071-10634339)
chr4 (292-402)||(3438284-3438394)
chr4 (305-357)||(53761465-53761517)
[»] chr6 (7 HSPs)
chr6 (305-402)||(6602840-6602937)
chr6 (300-402)||(7993817-7993919)
chr6 (304-399)||(7131983-7132078)
chr6 (305-402)||(19632785-19632882)
chr6 (300-351)||(6426855-6426906)
chr6 (143-237)||(6594411-6594505)
chr6 (305-357)||(10579435-10579487)
[»] chr5 (2 HSPs)
chr5 (11-73)||(17205598-17205660)
chr5 (294-402)||(20477717-20477825)
[»] chr1 (8 HSPs)
chr1 (40-239)||(29718792-29718994)
chr1 (132-239)||(29658765-29658872)
chr1 (132-239)||(29691280-29691387)
chr1 (132-239)||(33160696-33160803)
chr1 (137-207)||(30827304-30827374)
chr1 (300-402)||(33160869-33160971)
chr1 (305-400)||(19468142-19468237)
chr1 (301-369)||(52082947-52083015)
[»] chr8 (1 HSPs)
chr8 (292-402)||(17627691-17627801)
[»] chr3 (1 HSPs)
chr3 (308-361)||(514401-514454)
[»] chr7 (3 HSPs)
chr7 (299-402)||(15091786-15091889)
chr7 (305-359)||(10169814-10169868)
chr7 (305-359)||(10177339-10177393)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 137 - 400
Target Start/End: Complemental strand, 10634339 - 10634071
Alignment:
Q  137 caatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaagagact 236  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||||| || ||||| |||||||| |||||||| ||||| |||||||||||||||||    
T  10634339 caataactcaaatccagcacgtccaagttgggaaaaatggaagtaaacaacatgatgtgttcatctcccaacagctcacagtgagccaaacaaagagact 10634240  T
Q  237 ttagtcgacgtccttcnnnnnnntcatcgtaagaataagaactctctacactcat-----caatagacgtgcattccattttgatctcactaagagaagg 331  Q
    | ||| || ||| | |       ||     |||||| |||| |||| | | || |     |||||||||||||||||||||||||||||||||| |||||    
T  10634239 taagttgaggtcttccaacaaaatccctcaaagaattagaattctcgaaattctttttcccaatagacgtgcattccattttgatctcactaagtgaagg 10634140  T
Q  332 acagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacac 400  Q
    |||||||||||| ||  |||  || ||||| ||  |||||| | |||||||||||||||||||||||||    
T  10634139 acagtttctaactaggtaaaaaaacgataactcgatgagaaacatacattcactaaggtttatagacac 10634071  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 402
Target Start/End: Complemental strand, 3438394 - 3438284
Alignment:
Q  292 caatagacgtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtt 391  Q
    ||||||| |||||||||||||| ||||||||||| |||||||| || ||||  |||||||  |||| |||||  ||||| |||| ||| |||||||||||    
T  3438394 caatagatgtgcattccatttttatctcactaagtgaaggacaattactaatgagtgaaaataaggctaattttgtgagcatcgaacaatcactaaggtt 3438295  T
Q  392 tatagacacca 402  Q
    |||||||||||    
T  3438294 tatagacacca 3438284  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 53761517 - 53761465
Alignment:
Q  305 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaagg 357  Q
    ||||||||||||||||||||| |||||||||||| || |||||| || |||||    
T  53761517 ttccattttgatctcactaagtgaaggacagtttttagcaagtgcaaacaagg 53761465  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 305 - 402
Target Start/End: Complemental strand, 6602937 - 6602840
Alignment:
Q  305 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacacca 402  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||| |||||    | ||||||||||||||||||||||||||    
T  6602937 ttccattttgatctcactaagtgaaggacagtttttaacaagtgaaaacaaggataattctgtgaggtaggaacattcactaaggtttatagacacca 6602840  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 300 - 402
Target Start/End: Complemental strand, 7993919 - 7993817
Alignment:
Q  300 gtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagaca 399  Q
    |||| |||||||||||| |||| ||| || |||||||||||||| ||||||| ||||| | |||| ||||| |||  |||||||||||||||||||||||    
T  7993919 gtgcgttccattttgatttcacgaagtgatggacagtttctaacgagtgaaaacaaggctgattctgtgagcatccgacattcactaaggtttatagaca 7993820  T
Q  400 cca 402  Q
    |||    
T  7993819 cca 7993817  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 399
Target Start/End: Original strand, 7131983 - 7132078
Alignment:
Q  304 attccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagaca 399  Q
    |||||||||||| ||||||||| ||||| ||||||||||| ||||||  ||||| |||||| ||||| |||  ||| |||| |||||||| |||||    
T  7131983 attccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaattctgtgagcatccaacagtcacgaaggtttacagaca 7132078  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 402
Target Start/End: Original strand, 19632785 - 19632882
Alignment:
Q  305 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacacca 402  Q
    ||||||||||||||||||||| |||||||| || ||||| || |||| ||| |||||||| |||||  ||  ||| ||| ||||||| ||||||||||    
T  19632785 ttccattttgatctcactaagtgaaggacaattactaacgagcgaaaacaatgataattctgtgagcttccaacagtcattaaggttgatagacacca 19632882  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 6426855 - 6426906
Alignment:
Q  300 gtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaa 351  Q
    |||| ||||||||| ||||||||||  |||||||||||||||||||||||||    
T  6426855 gtgccttccattttaatctcactaattgaaggacagtttctaacaagtgaaa 6426906  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 6594505 - 6594411
Alignment:
Q  143 ctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaagagactt 237  Q
    |||||||| |||| ||||||  |||||||||| |||| |||||  | ||||||||||||| ||||  ||| ||||  ||||||||||||||||||    
T  6594505 ctcaaatcaagcagctccaaagtggggaaaatagaagcaaacaatatgatgttttcatctttcaagtgctcacagcgagccaaacaaagagactt 6594411  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 10579487 - 10579435
Alignment:
Q  305 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaagg 357  Q
    ||||||||||||||||||||| |||||||| ||||| || || |||| |||||    
T  10579487 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaagg 10579435  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 17205598 - 17205660
Alignment:
Q  11 agcataggaaaacactttgagatgagacagagtgatttatcatcaacatctgtgtatgacaag 73  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  17205598 agcataggaaaacacttttagatgatacagagtgatttatcatcaacatctgtgtatgacaag 17205660  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 294 - 402
Target Start/End: Complemental strand, 20477825 - 20477717
Alignment:
Q  294 atagacgtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggttta 393  Q
    ||||| ||| |||||||||||||||||| ||| ||||||||||||||||| ||||||  ||||| |||||| ||||||  |  ||| |||||||| ||||    
T  20477825 atagatgtgtattccattttgatctcacaaagtgaaggacagtttctaactagtgaatacaaggctaattctgtgagatgcaaacaatcactaagattta 20477726  T
Q  394 tagacacca 402  Q
    |||||||||    
T  20477725 tagacacca 20477717  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 29718994 - 29718792
Alignment:
Q  40 gagtgatttatcatcaacatctgtgtatgacaagttcatatgcttaagattatgaca---tcttaatactagaccaacaatttcctcacacatgcccttc 136  Q
    |||||||||||||||||| |  || ||||||||||||| ||||||||  |||  |||   |||||| |||  |  |||| |||| ||| |||   |||||    
T  29718994 gagtgatttatcatcaacgttggtatatgacaagttcaaatgcttaatcttagtacaacatcttaaaactttagaaacagtttcttcagacacttccttc 29718895  T
Q  137 caatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaagagact 236  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||  |  ||||||| |||||||||    | ||||  |||||||||||||||||    
T  29718894 caatagctcaaatcaagcacctccaagttggggaaaatggaagcaaacaatataatgttttgatctctcaagtattgacagcgagccaaacaaagagact 29718795  T
Q  237 tta 239  Q
    |||    
T  29718794 tta 29718792  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 29658872 - 29658765
Alignment:
Q  132 ccttccaatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaag 231  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||| |||||  | |||||||| |||||||||    | ||||  ||||||||||||    
T  29658872 ccttccaatagctcaaatcaagcacttccaagttggggaaaatggaagcaaacaatatgatgttttgatctctcaagtattgacagcgagccaaacaaag 29658773  T
Q  232 agacttta 239  Q
    ||||||||    
T  29658772 agacttta 29658765  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 29691387 - 29691280
Alignment:
Q  132 ccttccaatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaag 231  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||  |  ||||||| |||||||||    | ||||  ||||||||||||    
T  29691387 ccttccaatagctcaaatcaagcacctccaagttggggaaaatggaagcaaacaatataatgttttgatctctcaagtattgacagcgagccaaacaaag 29691288  T
Q  232 agacttta 239  Q
    ||||||||    
T  29691287 agacttta 29691280  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 33160696 - 33160803
Alignment:
Q  132 ccttccaatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaag 231  Q
    ||||| ||||||||||||| ||||||||||| |||||||| ||| ||| |||||  | ||||||||||||||||||  ||| |||||  |||||| ||||    
T  33160696 ccttcgaatagctcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaag 33160795  T
Q  232 agacttta 239  Q
    ||||||||    
T  33160796 agacttta 33160803  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 30827304 - 30827374
Alignment:
Q  137 caatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaa 207  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||  | ||||||||||||||||||    
T  30827304 caatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctcaa 30827374  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 402
Target Start/End: Original strand, 33160869 - 33160971
Alignment:
Q  300 gtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagaca 399  Q
    ||||||||||||||||| |||||||| |||||||||||| |||||||||||| ||| | | |||| |||||  ||  |||| || |||||||||||||||    
T  33160869 gtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtgagcctccaacatccattaaggtttatagaca 33160968  T
Q  400 cca 402  Q
    |||    
T  33160969 cca 33160971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 400
Target Start/End: Complemental strand, 19468237 - 19468142
Alignment:
Q  305 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacac 400  Q
    ||||||||||||||||||||| |||||||| || ||||| |||| || ||||| | | |  |||||   | |||||||||||||||||||||||||    
T  19468237 ttccattttgatctcactaagtgaaggacaattcctaacgagtgtaaacaaggttgaatatgtgaggtccatacattcactaaggtttatagacac 19468142  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 52082947 - 52083015
Alignment:
Q  301 tgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtga 369  Q
    ||||||||||| ||||||  || ||  |||||||||| ||||| ||||| ||||||| |||||||||||    
T  52082947 tgcattccattatgatcttgctgaggaaaggacagttcctaactagtgacagcaaggttaattcagtga 52083015  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 402
Target Start/End: Complemental strand, 17627801 - 17627691
Alignment:
Q  292 caatagacgtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtt 391  Q
    ||||||| |||||||||||||| |||||| |||| |||||||| || ||||| ||||||| ||||| | ||||   ||| |||  ||| | |||||||||    
T  17627801 caatagatgtgcattccatttttatctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattcgtcgagcatccgacaataactaaggtt 17627702  T
Q  392 tatagacacca 402  Q
    || ||||||||    
T  17627701 tacagacacca 17627691  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 514454 - 514401
Alignment:
Q  308 cattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataa 361  Q
    |||||||||||||||||| |||||||||||  ||||||||| || |||||||||    
T  514454 cattttgatctcactaagtgaaggacagttcttaacaagtgcaaacaaggataa 514401  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 402
Target Start/End: Complemental strand, 15091889 - 15091786
Alignment:
Q  299 cgtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagac 398  Q
    |||||||| ||||||||| ||| |||| ||||||||||||||| | ||||||| ||||| |  ||| |||||| |   |||  || ||||||||||||||    
T  15091889 cgtgcatttcattttgatttcaataagcgaaggacagtttctaccgagtgaaaacaaggttgtttctgtgagattacgacaagcattaaggtttatagac 15091790  T
Q  399 acca 402  Q
    ||||    
T  15091789 acca 15091786  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 10169868 - 10169814
Alignment:
Q  305 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggat 359  Q
    ||||||||||||||||||||| |||||||| || ||||| |||| || |||||||    
T  10169868 ttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaaggat 10169814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 10177393 - 10177339
Alignment:
Q  305 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggat 359  Q
    ||||||||||||||||||||| |||||||| || ||||| |||| || |||||||    
T  10177393 ttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaaggat 10177339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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