View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20222_low_17 (Length: 396)
Name: NF20222_low_17
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_low_17 |
 | |
|
| [»] scaffold0586 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 38935426 - 38935808
Alignment:
| Q |
1 |
gcattgtgtacctggagccatgtagccataggatccggcaactgaggtccaagtcgaattgttagagcttagcagctttgcagtgccaaaatctgcaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38935426 |
gcattgtgtacctggagccatgtagccataggatccggcaactgaggtccaagtcgaattgttagagtttagcagctttgcagtgccaaaatctgcaaga |
38935525 |
T |
|
| Q |
101 |
tgaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaattggtggagagcaatcactatgcaggtaagcgattgcatgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38935526 |
tgaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaattgctggagagcaatcactatgcaggtaagcgattgcatgag |
38935625 |
T |
|
| Q |
201 |
ctattccttgcacaattttcacccttgcactccaacttagctccaattttccttctcctccatacaacacttttcccaagcttcctttctctacatgttc |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38935626 |
ctattccttgcacaatttccacccttgcactccaacttagctccaattttccttctcctccatacaacacttttcccaagcttcctttctctacatgttc |
38935725 |
T |
|
| Q |
301 |
ataaaccaggaacatttgtctcctcatagaacagaaaccataaagctttattatattccggtgcctcacttctgttagcgttc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38935726 |
ataaaccaggaacatttgtctcctcatagaacagaaaccataaagctttattatattccggtgcctcacttctgttagcgttc |
38935808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 10108 - 10264
Alignment:
| Q |
2 |
cattgtgtacctggagccatgtagccataggatccggcaactgaggtccaagtcgaattgttagagcttagcagctttgcagtgccaaaatctgcaagat |
101 |
Q |
| |
|
|||||||||| |||| || |||||||||||||| | |||||||| ||| ||| | ||||||| ||||||||| ||| |||| |||||||||||||| |
|
|
| T |
10108 |
cattgtgtacttggaaccgtgtagccataggatacaacaactgagctcctagttgtattgttaaagcttagcaacttgatagtg--aaaatctgcaagat |
10205 |
T |
|
| Q |
102 |
gaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt |
160 |
Q |
| |
|
| |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
10206 |
gtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatt |
10264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 22902386 - 22902535
Alignment:
| Q |
9 |
tacctggagccatgtagccataggatccggcaactgaggtccaagtcgaattgttagagcttagcagctttgcagtgccaaaatctgcaagatgaggtac |
108 |
Q |
| |
|
|||||||| || |||||||||||||| | |||||||| ||| ||| | ||||||| | ||||||| || |||| |||||||| |||||| ||||| |
|
|
| T |
22902386 |
tacctggaaccgtgtagccataggatacaacaactgagctcctagttgtattgttaaaacttagcaatttgatagtg--aaaatctgtaagatgtggtac |
22902483 |
T |
|
| Q |
109 |
ataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt |
160 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
22902484 |
ataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatt |
22902535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 26662125 - 26662279
Alignment:
| Q |
4 |
ttgtgtacctggagccatgtagccataggatccggcaactgaggtccaagtcgaattgttagagcttagcagctttgcagtgccaaaatctgcaagatga |
103 |
Q |
| |
|
||||||| || || ||||||||||||||||| | |||||||| ||| ||| | ||||||| ||||||| | ||| |||| ||||||||||||||| |
|
|
| T |
26662125 |
ttgtgtatctagaaccatgtagccataggatacatcaactgagctcctagttgtattgttaaagcttagtaacttgatagtg--aaaatctgcaagatgt |
26662222 |
T |
|
| Q |
104 |
ggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt |
160 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||||| |||| |||||| |||| |
|
|
| T |
26662223 |
ggtacataatctaagtcaagtagtatgatgttcaatgttacatctttgtgcataatt |
26662279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 19702441 - 19702513
Alignment:
| Q |
88 |
aaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt |
160 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
19702441 |
aaaatctgcaagatgtggtacataatctaagacaagtagtatgatgttcaatgttatatctctgtgcacaatt |
19702513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 10638153 - 10638272
Alignment:
| Q |
1 |
gcattgtgtacctggagccatgtagccataggatccggcaactgaggtccaagtcgaattgttagagcttagcagctttgcagtgccaaaatctgcaaga |
100 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| | |||||||| ||| ||| | ||||||| | ||||||| || |||| ||||||||||||| |
|
|
| T |
10638153 |
gcattgtgtacctggaaccgtgtagccataggatacaacaactgagctcctagttgtattgttaaaacttagcaatttgatagtg--aaaatctgcaaga |
10638250 |
T |
|
| Q |
101 |
tgaggtacataatctgagtcaa |
122 |
Q |
| |
|
|| |||||||||||| |||||| |
|
|
| T |
10638251 |
tgtggtacataatctaagtcaa |
10638272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University