View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20222_low_18 (Length: 393)
Name: NF20222_low_18
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 12 - 374
Target Start/End: Complemental strand, 47368615 - 47368253
Alignment:
| Q |
12 |
tattctctgttcccaattgaaatatgtattggttataaaagaatctaccaatctccacagactcaatagttccaaaccaataataaataccagctatccc |
111 |
Q |
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| T |
47368615 |
tattctctgttcccaattgaaatatgtattggttataaaagaatctaccaatctccacagactcaatagttccaaaccaataataaataccagctatccc |
47368516 |
T |
|
| Q |
112 |
tgcaattctaaagcaaattcaaaaagaagccaaaactacaactctcatactggagctaaaagatgaatatgctgattttcaagtgtcttcagatggcttt |
211 |
Q |
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| T |
47368515 |
tgcaattctaaagcaaattcaaaaagaagccaaaactacaactctcatactggagctaaaagatgaacatgctgattttcaagtgtcttcagatggcttt |
47368416 |
T |
|
| Q |
212 |
gctgctagttttgtctagcagattcaccgtagcagaaaagaaaacacagcatcttaaaaggacatacataattcacatggacaagttcaacatgccagca |
311 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47368415 |
gctgctagttttgtctagcagattcaccatagcagaaaagaaaacacaacatcttaaaaggacatacataattcacatggacaagttcaacatgccagca |
47368316 |
T |
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| Q |
312 |
agtttcgacgatcatctccaatggtatgattcatcactaaaatcagtatcagacactgcagag |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47368315 |
agtttcgacgatcatctccaatggtatgattcatcactaaaatcagtatcagacactgcagag |
47368253 |
T |
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