View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20222_low_22 (Length: 319)
Name: NF20222_low_22
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 4375550 - 4375771
Alignment:
| Q |
10 |
agatgaattaagtgaaagtttatcatattttgtttatgaacttttttgtagtgtatcaaattgctcaatttagatgtatgtgtgtttatacatcggtgtt |
109 |
Q |
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| T |
4375550 |
agatgaattaagtgaaagtttatcatattttgtttatgaacttttttgtagtgtatcaaattgctcaatttagatgtatgcgtgtgtatatatcggtgtt |
4375649 |
T |
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| Q |
110 |
gctatcctatatttttaaatataacagtgtcaatgtgtccgtgtctgtatcatgtcagactgtcagttgtccctgtcggagtcatgcttcatataaaacg |
209 |
Q |
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| T |
4375650 |
gctatcctatatttttaaatacaacagtgtcaacatgttcgtgtctgtatcatgtccgactgtcagttgtccgtgtcggagtcatgcttcatataaaacg |
4375749 |
T |
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| Q |
210 |
agacttgatgagatagaggcat |
231 |
Q |
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|| || ||||||||| |||||| |
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| T |
4375750 |
agcctcgatgagataaaggcat |
4375771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 47954354 - 47954393
Alignment:
| Q |
48 |
aacttttttgtagtgtatcaaattgctcaatttagatgta |
87 |
Q |
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| T |
47954354 |
aacttgtttgtagtgtaacaaattgctcaatttagatgta |
47954393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 21249223 - 21249276
Alignment:
| Q |
33 |
catattttgtttatgaacttttttgtagtgtatcaaattgctcaatttagatgt |
86 |
Q |
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| T |
21249223 |
catattttgttttagaacttttttgtagtgtaccaaattgcccagattagatgt |
21249276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 21253600 - 21253653
Alignment:
| Q |
33 |
catattttgtttatgaacttttttgtagtgtatcaaattgctcaatttagatgt |
86 |
Q |
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| T |
21253600 |
catattttgttttagaacttttttgtagtgtaccaaattgcccagattagatgt |
21253653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 23445081 - 23445134
Alignment:
| Q |
32 |
tcatattttgtttatgaacttttttgtagtgtatcaaattgctcaatttagatg |
85 |
Q |
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| T |
23445081 |
tcatattttgtttaagaacttttttgtagtgtaccaaattgctcaatttcgatg |
23445134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 3803373 - 3803326
Alignment:
| Q |
39 |
ttgtttatgaacttttttgtagtgtatcaaattgctcaatttagatgt |
86 |
Q |
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| T |
3803373 |
ttgtttaagaacctttttgtagtgtaccaaattgctcaatttagatgt |
3803326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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