View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20222_low_3 (Length: 639)
Name: NF20222_low_3
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 544; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 15 - 622
Target Start/End: Complemental strand, 1490346 - 1489735
Alignment:
| Q |
15 |
cataggcagggtgaaatggtgtggatatcaggacattgagatcaggaatgtgcttctcaagttctggcaacatgacaaaaattagtcataagttcaagca |
114 |
Q |
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| T |
1490346 |
cataggcagggtgaaatggtgtggatatcaggacattgagatcaggaatgtgcttctcaagttctggcaacatgacaaaaattagtcataagttcaagca |
1490247 |
T |
|
| Q |
115 |
atcacaaacttgagatattatctgcatattcttaattaaatatatttgtttagttactgcatagacgtaataagagggtgtatcaatttggcataatgct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1490246 |
atcacaaacttgagatattatctgcatattcttaattaaatatatttgtttagttactgcatagacgtaataagagggtgtatcaatttggcataatgct |
1490147 |
T |
|
| Q |
215 |
aaccagaattgagtccttctttgtcatcagtgacaatgtattcatgtccttgtgattccaaccactcgcgtatacctaatgctccttcaacacatccaac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1490146 |
aaccagaattgagtccttctttgtcatcagtgacaatgtattcatgtccttgtgattccaaccactcgcgtatacctaatgctccttcaacacatccaac |
1490047 |
T |
|
| Q |
315 |
aaaattgggattcaaggaagcatattcgccgcctttgtagaacacacctacaatcttcttctttccaccagaggcctattctcaacaacag----nnnnn |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1490046 |
aaaattgggattcaaggaagcatattcgccgcctttgtagaacacacctacaatcttcttctttccaccagaggcctattctcaacaacagaaaaaaaaa |
1489947 |
T |
|
| Q |
411 |
nnnnntggtaatgcataagaaaagtcaaagaacaaaacaagcatacataaaagactaaggtaaactactaaaactgttattttgtgtgaaattgtacatg |
510 |
Q |
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| T |
1489946 |
aaaaatggtaatgcataagaaaagtcaaagaacaaaacaagcatacataaaagactaaggtaaactactaaaactgttattttgtgtgaaattgtacatg |
1489847 |
T |
|
| Q |
511 |
ctatttaatttcatttgacaaannnnnnnaacattattattttagctacaccaaaaatttagtcctagacaagtataatgattatactaatgtaggattg |
610 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1489846 |
ctatttaatttcatttgacaaatttttttaacattattattttagctacaccaaaaatttagtcctagacaagtataatgattatactaatgtaggattg |
1489747 |
T |
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| Q |
611 |
catacatttatt |
622 |
Q |
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|||||||||||| |
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| T |
1489746 |
catacatttatt |
1489735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 186 - 399
Target Start/End: Complemental strand, 1494952 - 1494739
Alignment:
| Q |
186 |
aagagggtgtatcaatttggcataatgctaaccagaattgagtccttctttgtcatcagtgacaatgtattcatgtccttgtgattccaaccactcgcgt |
285 |
Q |
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||||||||| || |||||| || ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |
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| T |
1494952 |
aagagggtggattaatttgtcaaaattctaaccagaatcaggtccttctttgtcatcagtgacaatgtattcatgtccttgtgattcaagccactcacgt |
1494853 |
T |
|
| Q |
286 |
atacctaatgctccttcaacacatccaacaaaattgggattcaaggaagcatattcgccgcctttgtagaacacacctacaatcttcttctttccaccag |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | | ||||| || ||||||||||||||||||||||| ||||||||||| ||| |
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| T |
1494852 |
atacctaatgctccttcaacacatccaacaaaattgggattggatgcagcattctcatttcctttgtagaacacacctacaattttcttctttccttcag |
1494753 |
T |
|
| Q |
386 |
aggcctattctcaa |
399 |
Q |
| |
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|||||||||||||| |
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| T |
1494752 |
aggcctattctcaa |
1494739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 1495078 - 1495007
Alignment:
| Q |
15 |
cataggcagggtgaaatggtgtggatatcaggacattgagatcaggaatgtgcttctcaagttctggcaaca |
86 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||| |||| |
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| T |
1495078 |
cataggcagggtgaaatggtgtagatatcaggacatgcagatcgggaatgtgcttctcgagttctggtaaca |
1495007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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