View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20222_low_30 (Length: 265)
Name: NF20222_low_30
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_low_30 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 942512 - 942253
Alignment:
| Q |
8 |
ccaagaatatatctcagaagaatatttaacggcataaaccacctatataattaattcatcaaagcacccctcaaaaaataaatcatcaaagcaattaaac |
107 |
Q |
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| T |
942512 |
ccaataatatatctcagaagaatatttaacggcataaaccacctatataattaattcattaaagcacccctcaaaaaataaatcatcaaagcaattaaac |
942413 |
T |
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| Q |
108 |
attcnnnnnnnaaaggccaaaaagatcacaaatat-ta-nnnnnnnnngagtgaaaaaagagcacaaatatattattaacaaaccaaaacagaccactac |
205 |
Q |
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| T |
942412 |
attctttttttaaaggccaaaaagatcacaaatatatatattttttttgagtgaaaaaagagcacaaatatattattaacaaaccaaaacagaccacagc |
942313 |
T |
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| Q |
206 |
aacacaaggtgtactaaagaatgtatcttagagaaccagagtacaataatagtacaaaag |
265 |
Q |
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| T |
942312 |
aacacaaggtgtactaaagaatgtctgtcagagaaccaaagtacaataatagtataaaag |
942253 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 38037764 - 38037717
Alignment:
| Q |
179 |
tattaacaaaccaaaacagaccactacaacacaaggtgtactaaagaa |
226 |
Q |
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| T |
38037764 |
tattaacaaaccaaaacataccacttcaacacaaggtatacgaaagaa |
38037717 |
T |
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