View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20222_low_31 (Length: 251)
Name: NF20222_low_31
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_low_31 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 33914187 - 33914429
Alignment:
| Q |
9 |
cgaagaatataaatttataataattaattttacattaatgtattcaaacacaaaccaatatacgttcatttcatttttaacttgaaaacaattttgtcaa |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
33914187 |
cgaacaatataaatttataataattaattttacattaatgtattcaaacacaaaccaatatacgttcatctcatttttaacttgaaaacaattttatcaa |
33914286 |
T |
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| Q |
109 |
aataaatttcatcaaaatcaatcctcctcacctcataattaaacaaaaacttaatcaattaatcgagttctataaataaataatatttttgagggaacaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33914287 |
aataaatttcatcaaaatcaatcctcctcacctcatgactaaacaaaaacttaatcaattaatcgagttctataaataaataatatttttgagggaacaa |
33914386 |
T |
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| Q |
209 |
taaataaataattattcccacaaatgatatattaatagtttgt |
251 |
Q |
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| T |
33914387 |
taaataaataattattcccacaaatgatatattaatagtttgt |
33914429 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 49526766 - 49526654
Alignment:
| Q |
17 |
ataaatttataataattaattttacattaatgtattcaaacacaaaccaatatacgttcatttcatttttaacttgaaaacaattttgtcaaaataaatt |
116 |
Q |
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||||||| |||| ||| |||||||||| ||||||| |||||| ||| |||| ||| ||| |||| |||||| | ||| ||||| | ||||||| |||| |
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| T |
49526766 |
ataaattgataagaatcaattttacatgaatgtatccaaacataaatcaatttacaatcaattcacttttaa-tcaaaatcaattctatcaaaatcaatt |
49526668 |
T |
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| Q |
117 |
tcatcaaaatcaat |
130 |
Q |
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| T |
49526667 |
tcatcaaactcaat |
49526654 |
T |
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