View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20222_low_35 (Length: 232)
Name: NF20222_low_35
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 37 - 212
Target Start/End: Original strand, 27125200 - 27125373
Alignment:
| Q |
37 |
aaaatattaggttgaaaataagaggtagaatgtgccaattgtatatgaatcggctgaacctattcaggtcctaccgattcaatactcgattggtattgat |
136 |
Q |
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| T |
27125200 |
aaaatattaggttgaaaataggaggtagaatgtgccaattgtatatgaatcagctgaacctattgaggtc--accgattcaatactcgattggtcttgat |
27125297 |
T |
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| Q |
137 |
taacaatatctacctaatttgtggttccttgcacaccttgttggtgaccgaattgtcaccaaaatcagttgaagct |
212 |
Q |
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| T |
27125298 |
taacaatgtctacataatttgtggttccttgtacaccttgttggtgaatgaattgtcaccaaaatcagttgaagct |
27125373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27125103 - 27125140
Alignment:
| Q |
1 |
aggtggcctcctcaccatatgtatgtgtctaggttgaa |
38 |
Q |
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| T |
27125103 |
aggtggcctcctcaccatatgtatctgtctagattgaa |
27125140 |
T |
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