View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20222_low_6 (Length: 533)
Name: NF20222_low_6
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 513
Target Start/End: Original strand, 8299044 - 8299541
Alignment:
| Q |
11 |
caaagggaggtgaattatatgatagtgtaactaagaatggattactatattcttcaatgtcttcatcatgtttgcctgtcaactgaaaaacaacttcaat |
110 |
Q |
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| T |
8299044 |
caaagggaggtgaattatatgatagtgtaactaagagtggattactatattcttcaatgtcttcatcatgt--gcctgtcaactgaaaaacaacttcaat |
8299141 |
T |
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| Q |
111 |
caccaaatggcgtgccttacagtcttttaaatccattgacttcacagaaaaaattgaggcagatgtaaacacatcaagataaaatattcacgcaatcaag |
210 |
Q |
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| T |
8299142 |
caccaaatggcgtgccttacagtcttttaaatc------------------aattgaggcagatgtaaacacatgaagataaaatattcacgcaatcaag |
8299223 |
T |
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| Q |
211 |
aatttgaaattttttgattaatttgcatcattgatgtaat---------------tgctgacatggttttgtagttgaagaacgaaatagagtagaatca |
295 |
Q |
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| T |
8299224 |
aatttgaaaatttgtgattaatttgcatcattgatgtaataagcaatattccttttgctgaaatggttttgtagttgaagaacgaaatagagtagaatca |
8299323 |
T |
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| Q |
296 |
agtattacagtttgtatactcatcgaaatttgagaaagaaatcagtgtggtattctatataatgaaaaatatcttcaacacc-aaatggtgtgacttaaa |
394 |
Q |
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| T |
8299324 |
agtattacagtttgtatactcatcgaaatttgagaaagaaatcagtgtggtattctatataatgaaaaatatcttcaacaccaaaatggtgtgacttaaa |
8299423 |
T |
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| Q |
395 |
gcctctgagactatccattgattccacagaaaaatttgaggc-gaggttaaacatcaagagaaattttcagattcaaacaaacaaataacccaatgtagg |
493 |
Q |
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| T |
8299424 |
gc--ctgagactatccattgattccacagaaaaatttgaggcaggggttaaacatcaagagaaattttcagattcaaacaaacaaataacccaatgtagg |
8299521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 442 - 501
Target Start/End: Original strand, 8308880 - 8308940
Alignment:
| Q |
442 |
taaacatcaa-gagaaattttcagattcaaacaaacaaataacccaatgtaggaaatgaaa |
501 |
Q |
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| T |
8308880 |
taaacatcaaagagaaattttcagattcaatcaaacaaataacccaatgtaggaaatgaaa |
8308940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 358 - 510
Target Start/End: Original strand, 8312332 - 8312486
Alignment:
| Q |
358 |
tgaaaaatatcttcaacaccaaatggtgtgacttaaagcctctgagactatccattgattccacagaaa--aatttgaggcgaggttaaacatcaagaga |
455 |
Q |
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| T |
8312332 |
tgaaaaacatcttcaacactgaatggtttgccttaaaacctcttagactgtccattgattcccaaaaaataaaatcgaagcagagtttaacatcaacaaa |
8312431 |
T |
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| Q |
456 |
aattttcagattcaaacaaacaaataacccaatgtaggaaatgaaattatcaagg |
510 |
Q |
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| T |
8312432 |
aaatttcacattcgaacaaacaaataacccaatgcaagaaatgaaattatcaagg |
8312486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 18281951 - 18281905
Alignment:
| Q |
117 |
atggcgtgccttacagtcttttaaatccattgacttcacagaaaaaa |
163 |
Q |
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| T |
18281951 |
atggtgtgccttgaagtcttttaaatccattgacttcacacaaaaaa |
18281905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 30255511 - 30255578
Alignment:
| Q |
11 |
caaagggaggtgaattatatgatagtgtaactaagaatggattac---tatattcttcaatgtcttca |
75 |
Q |
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| T |
30255511 |
caaagggagatgaattatatgatattgtaactaagaatagattactagtatattctccaatgtcttca |
30255578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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