View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20222_low_9 (Length: 470)
Name: NF20222_low_9
Description: NF20222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20222_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 299
Target Start/End: Original strand, 6097287 - 6097570
Alignment:
| Q |
16 |
aaattggacacctatgcaaatatgtggagataaacatcagaaaaaggatatatgaatataatttttacatcttttaagataacttattcaatagatacaa |
115 |
Q |
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| T |
6097287 |
aaattggacacctatgcaaatatgtggagataaacatcagaaaaaggatatatgaatataatttttacatcttttaagataacttattcaatagatacaa |
6097386 |
T |
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| Q |
116 |
tacttaatttaccatataggaatttaacaaaagaatcagagttggttcctgattgtacttgatgttcaaggctatcaagaaaaagcttgatgttcaaata |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6097387 |
tacttaatttaccatatatgaatttaacaaaagaatcagagttgtttcctgattgtacttgatgttcaaggctatcaagaaaaagcttgatgttcaaata |
6097486 |
T |
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| Q |
216 |
gaaagtatggaacaataataaatcatgaataagaagagctaaagaataaagatatagttctttaagataatcaaaacaaattac |
299 |
Q |
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| T |
6097487 |
gaaagtatggaacaataataaatcatgaataagaagagctaaagaataaagatatagttctttaagataatcaaaacaaattac |
6097570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 197 - 402
Target Start/End: Complemental strand, 1593338 - 1593132
Alignment:
| Q |
197 |
aaagcttgatgttcaaatagaaagtatggaacaataata--aatcatgaataagaagagctaaagaataaagatatagttctttaagataatcaaaacaa |
294 |
Q |
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| T |
1593338 |
aaagtttgatgttcaaacagaaagtatggaacaatagtagaaatcatgaatgagaagaggtgaagaataaagatatagttctttgagataatcaaaacaa |
1593239 |
T |
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| Q |
295 |
attactttgcagagattgagtnnnnnnnccagtcaaaactcaaaccaatagaccagtgtaaaaattgaaagtgggtgtggtgtacactgtgtgtaggcat |
394 |
Q |
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| T |
1593238 |
attactttgcagagagtga-tgaaagaaccagtcacaagtcaaaccaataaaccagtggaaaaattgaaagtgggtgtggtttacattgtgtgtaggcat |
1593140 |
T |
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| Q |
395 |
tggtattg |
402 |
Q |
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| T |
1593139 |
tggtattg |
1593132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 368 - 456
Target Start/End: Original strand, 6097751 - 6097839
Alignment:
| Q |
368 |
ggtgtggtgtacactgtgtgtaggcattggtattgcgtcagtgttttatagcttttcattatttgggacaagagtattattgtactgat |
456 |
Q |
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| T |
6097751 |
ggtgtggtgtacattgtgtgtaggcattggtattgcgtcagtgtttcatagcttttcattatttgggacaagagtattattgtactgat |
6097839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 46008906 - 46008827
Alignment:
| Q |
78 |
ttttacatcttttaagataacttattcaatagatacaatacttaatttaccatataggaatttaacaaaagaatcagagt |
157 |
Q |
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| T |
46008906 |
ttttacatctttcaaaataatttattcaatagatacaatacttaatttaccatataggaatttaacaaaagaatcagagt |
46008827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 46009051 - 46008993
Alignment:
| Q |
16 |
aaattggacacctatgcaaatatgtggagataaacatcagaaaaaggatatatgaatat |
74 |
Q |
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| T |
46009051 |
aaattggacacctatgcaaatatgtggagataaacatcaaaaaaatgatacatgaatat |
46008993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 4636476 - 4636551
Alignment:
| Q |
78 |
ttttacatcttttaagataacttattcaatagatacaatacttaatttaccatataggaatttaacaaaagaatca |
153 |
Q |
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| T |
4636476 |
ttttacatcttttaagatgatttattcaatagatacaatacttaatttaccatataggactttaacaaaagaatca |
4636551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 4636331 - 4636389
Alignment:
| Q |
16 |
aaattggacacctatgcaaatatgtggagataaacatcagaaaaaggatatatgaatat |
74 |
Q |
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| T |
4636331 |
aaattggacacctatgcaaatatgtggagataaacatcaaaaaaaggatacatgaatat |
4636389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 3077160 - 3077104
Alignment:
| Q |
18 |
attggacacctatgcaaatatgtggagataaacatcagaaaaaggatatatgaatat |
74 |
Q |
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| T |
3077160 |
attggacacctatgcaaatatgtggacaaaagcatcacaaaaaggatacatgaatat |
3077104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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