View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20223_low_1 (Length: 595)
Name: NF20223_low_1
Description: NF20223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20223_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 184 - 579
Target Start/End: Complemental strand, 36960355 - 36959960
Alignment:
| Q |
184 |
atgattgttgcttcttcattccattccaaaataaaaccaaatcggatcatagtatttttaatnnnnnnnctaactagctaataaataaaaagtcatttcg |
283 |
Q |
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| T |
36960355 |
atgattgttgcttcttcattccattccaaaataaaaccaaatcggatcatagtatttttaatcaaaaaactaactagctaataaataaaaagtcatttcg |
36960256 |
T |
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| Q |
284 |
atctttaaatatgtcaagcgctctcactataatcattgatggaatgaatttaaattataaaaacatcttgaatgtgtttgttattaatgagtatgattct |
383 |
Q |
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| T |
36960255 |
atctttaaatatgtcaagcgctctcactataatcattgatggaatgaatttaaattataaaaacatcttgaatgtgtttgttattaatgagtatgattct |
36960156 |
T |
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| Q |
384 |
cgaatgtattatttctttgttagtttgatcttcaaatttctcttatgttggtcaatttaaacaacaaaattattagaaaatggcatagtcaaggatgtta |
483 |
Q |
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| T |
36960155 |
cgaatgtattatttctttgttagtttgatcttcaaatttctcttatgttggtcaatttaaacaacgaaatcattagaaaatggcatagtcaaggatgtta |
36960056 |
T |
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| Q |
484 |
ttataattttgatatattttagaactatagtgacacacacagcctcgcatatttttggaccaaaatgataattcactctaataataacttgtttgt |
579 |
Q |
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| T |
36960055 |
ttataattttgatatattttagaactatagtgacacacacagcctcgcatatttttggaccaaaatgataattcactctaataataacttgtttgt |
36959960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 36960556 - 36960399
Alignment:
| Q |
9 |
gaagaaaatgtacatatgaactagaattcaaaataaaaagtgtatttgaattttgaaggattttgctttgcaaaaggcagagaataattagatcaaagag |
108 |
Q |
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| T |
36960556 |
gaagaaaatgtacatatgaactagaattcaaaataaaaagtgtatttgaattttgaaggattttgctttgcaaaaggcagagaataattagatcaaagag |
36960457 |
T |
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| Q |
109 |
gccttgatgtcaattttacatttgatatcaagaaaatgtctgtaatttaatgttagtg |
166 |
Q |
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| T |
36960456 |
gccttgatgtcaattttacatttgatatcaagaaaatgtctgtaatttaatgttagtg |
36960399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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