View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20224_high_9 (Length: 298)
Name: NF20224_high_9
Description: NF20224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20224_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 32317616 - 32317344
Alignment:
| Q |
9 |
gagatgaaattgattgacaatctttaattttaaagattaatttgtgtttttgcaagtttgaaggatcaaattgctcaacctcctccaatttcaaaggaca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32317616 |
gagatgaaattgattgacaatctttaattttaaagattaatttgtgtttttgcaagtttgaaggatcaaattgctcaacctcctccaatttcaaaggaca |
32317517 |
T |
|
| Q |
109 |
aataaaaatgacgttttttcttttcaaatggccacttactaggtaaaaactgatatcggtcacttttaattcacctgctgctgttatttttgtgttgact |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32317516 |
aataaaaatgacgttttttcttttcaaatggccacttactaggtaaaaactgatatcagtcacttttaattcacctgctgctgttatttttgtgttgact |
32317417 |
T |
|
| Q |
209 |
cttcatagcatggctttacaaaacatgcaaaagatattggaattttatttggcgttaaatcataatagcttgt |
281 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32317416 |
cttcatagcatggctatacaaaacatgcaaaagatattggaattttatttggcgttaaatcataatagcttgt |
32317344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University