View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20224_low_1 (Length: 648)
Name: NF20224_low_1
Description: NF20224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20224_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 8891304 - 8891739
Alignment:
| Q |
18 |
ctttgaaccacgtcatctccgcccccttcatggttaatacaaaaagcttacacttcactgctcc-cttccctagtgatagtcaaggaaagtatcaatgtg |
116 |
Q |
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| T |
8891304 |
ctttgaaccacgtcatctccgctcccttcatggttaatacaaaaagcttacacttcactgctcgtcttccctagtgatagtcaaggaaagtatcaatgtg |
8891403 |
T |
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| Q |
117 |
ttctttagaatcatttgttctgtcatagttttcaagctttaaaggtttcttaaaggcgcatgcaattgggcattcaaggatttcttcttgtgaaaggccc |
216 |
Q |
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| T |
8891404 |
ttctttagaatcattcgttccgtcatagttttcaagctttaaaggtttcttaaaggcgcatgcaattgggcattcaaggatttcttcttgtgaaaggccc |
8891503 |
T |
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| Q |
217 |
tattctatggtggttgtgacgtcgtgttggggaacattcctctcgtcttatgtcaccatgacgatgaggtagggagcctctcttgcttcctcaatggcaa |
316 |
Q |
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| T |
8891504 |
tattctatggtggttgtgacgtcgtgttggggaacattcctctcgtcttatgtcaccatgacgatgaggtgaggagcctctcttgcttcctcaacggtaa |
8891603 |
T |
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| Q |
317 |
gaggaacgactactgcttccttcgtcgggatcctttggaggaatagtcttctttgtttgtggctttgccataacgtagattgtgtcgtcaactaccgttg |
416 |
Q |
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| T |
8891604 |
gaggaacgactactgcttccttcgtcgggatcctctggaggattattcttctttgtttgtggctttgccataacgtagattgtgtcgtcaactgccgttg |
8891703 |
T |
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| Q |
417 |
gagtactgttttgttggttacgttgcaccacttcaa |
452 |
Q |
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| T |
8891704 |
gagtactgttttgctggttacgttgcaccacttcaa |
8891739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 448 - 579
Target Start/End: Original strand, 8892624 - 8892755
Alignment:
| Q |
448 |
ttcaaaatattaactaatgcaattgtaatattttcatttgtatccatttcacccttcaatgaaatatatcttaattttgttaattaatcttttagaaaat |
547 |
Q |
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| T |
8892624 |
ttcaaaatattatctaatgcaattgtaatattttcatttgtatccatttcacccttcaatgaaatatatcttaatttagttaattaatcttttagaaaat |
8892723 |
T |
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| Q |
548 |
atccatcattacaaacttttctaacatgctaa |
579 |
Q |
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| T |
8892724 |
atccatcattacaaacttttctaacatgctaa |
8892755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 503 - 579
Target Start/End: Original strand, 8892864 - 8892940
Alignment:
| Q |
503 |
tcaatgaaatatatcttaattttgttaattaatcttttagaaaatatccatcattacaaacttttctaacatgctaa |
579 |
Q |
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| T |
8892864 |
tcaatgaaatatattttactttagttaattaatcttttagaaaatattcataattaaaaaaatttctaacatgctaa |
8892940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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