View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20224_low_10 (Length: 318)
Name: NF20224_low_10
Description: NF20224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20224_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 656084 - 655799
Alignment:
| Q |
18 |
aaactcgcctacatgcagatctcgaagagctcctacatggatgtcagaatacacaaccagagaaggactttcagaggaggaagaaacaatgatggtaata |
117 |
Q |
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| T |
656084 |
aaactcgcctacaggcagatctcgaagagctcctgcatggatgtcagaatacacaaccggagaaggactttcagaggaggaagaagcaatgatgataata |
655985 |
T |
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| Q |
118 |
acagaagaagatccagtcacatacaatgaagctgcgaaagnnnnnnnn-tggagagatgcgatggctaaagagattgactcgatagagaaaaatggcacg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
655984 |
acagaagaagatccagtcacatacaatgaagctgcgaaagaaaaaaaaatggagagatgcgatggctaaagagattgactcgatagagaaaaatggcacg |
655885 |
T |
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| Q |
217 |
tggagacttacaaccttgccgaatggagtcaaagatattggagttaaatgggtttttaaaaccaagcttaacgaacatggtaatgt |
302 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
655884 |
tggagacttacaaccttgccgaatggagtcaaagctattggagttaaatgggtttttaaaaccaagcttaacgaacatggtaatgt |
655799 |
T |
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