View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20224_low_18 (Length: 232)

Name: NF20224_low_18
Description: NF20224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20224_low_18
NF20224_low_18
[»] chr2 (25 HSPs)
chr2 (17-214)||(38792307-38792505)
chr2 (53-210)||(39136522-39136679)
chr2 (35-214)||(39473947-39474126)
chr2 (55-181)||(39422192-39422318)
chr2 (55-124)||(39152141-39152210)
chr2 (99-214)||(38792649-38792764)
chr2 (20-122)||(39487953-39488055)
chr2 (162-210)||(38793217-38793265)
chr2 (138-214)||(39136859-39136935)
chr2 (20-106)||(39458417-39458503)
chr2 (151-204)||(39415161-39415214)
chr2 (67-124)||(39416129-39416186)
chr2 (151-214)||(39415787-39415850)
chr2 (152-214)||(39390598-39390660)
chr2 (153-214)||(39221679-39221740)
chr2 (155-214)||(38792567-38792626)
chr2 (151-214)||(39415535-39415598)
chr2 (152-214)||(39192893-39192955)
chr2 (152-214)||(39198573-39198635)
chr2 (121-214)||(38792923-38793016)
chr2 (165-214)||(39193103-39193152)
chr2 (165-214)||(39198783-39198832)
chr2 (154-211)||(39390181-39390238)
chr2 (157-214)||(39451714-39451771)
chr2 (170-214)||(39137302-39137346)
[»] chr7 (2 HSPs)
chr7 (22-212)||(19806852-19807042)
chr7 (151-214)||(19807233-19807296)
[»] chr5 (1 HSPs)
chr5 (20-104)||(17059049-17059133)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 38792307 - 38792505
Alignment:
Q  17 taggcaagaacttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38792307 taggcaagaacttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaa-cagaagcatttggaaagccaagtgaaggagctggtgaat 38792405  T
Q  117 gatttggtgt--tgagacaaaagcagttcgagagcggaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    ||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38792406 gatttggtgtgttgagacaaaagcagtttgagagcggaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 38792505  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 210
Target Start/End: Original strand, 39136522 - 39136679
Alignment:
Q  53 tcaagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaatgatttggtgttgagacaaaagcagttcgagagcgga 152  Q
    ||||||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |  | ||| ||||| ||||| |||       
T  39136522 tcaagtcatggataacatttcaaaacaaaaggaattggaaagccaagtgaaggagctggtgaatgatttggtatcaaaacagaagcatttcgaaagccat 39136621  T
Q  153 atgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaat 210  Q
    || ||||| |||||||  ||||||| ||| | |||||| ||  |||||||||||||||    
T  39136622 attaaggagcttgagtcgaaagagaggcaacttgaaggccgattgaaggagcatgaat 39136679  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 214
Target Start/End: Complemental strand, 39474126 - 39473947
Alignment:
Q  35 aaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaatgatttggtgttgagacaa 134  Q
    |||||| | ||| |||| ||||||||||||| ||||||||||||||||| | || |||||||||||||||||||| |||||||||||||| |  | |||     
T  39474126 aaaagatatggaactttgtcaagtcatggataacatttcaaaacagaaggaatttgaaagccaagtgaaggagctagtgaatgatttggtatcaaaacag 39474027  T
Q  135 aagcagttcgagagcggaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    ||||| || || ||| | ||| || | ||| ||| |||||||||||||| ||| || || ||| |||||||| |||||||    
T  39474026 aagcattttgaaagccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtggaggagcataaatcaaa 39473947  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 181
Target Start/End: Complemental strand, 39422318 - 39422192
Alignment:
Q  55 aagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaatgatttggtgttgagacaaaagcagttcgagagcggaat 154  Q
    ||||||||||||||||||||||||||||| | |||||| ||||| ||   ||||||| |||||||||||| |  | ||| ||||| || || ||| ||||    
T  39422318 aagtcatggatgacatttcaaaacagaaggaattggaaggccaattggccgagctggagaatgatttggtatcaaaacagaagcaatttgaaagccgaat 39422219  T
Q  155 gaaggaccttgagttaaaagagaagca 181  Q
    ||||||||||||||  |||||||||||    
T  39422218 gaaggaccttgagtctaaagagaagca 39422192  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 39152141 - 39152210
Alignment:
Q  55 aagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaatgatttggt 124  Q
    ||||||||||| ||||||||||||||||| | || ||||||||||| |||||||||||||||||||||||    
T  39152141 aagtcatggataacatttcaaaacagaaggaatttgaaagccaagtaaaggagctggtgaatgatttggt 39152210  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 214
Target Start/End: Original strand, 38792649 - 38792764
Alignment:
Q  99 gtgaaggagctggtgaatgatttggtgttgagacaaaagcagttcgagagcggaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtga 198  Q
    |||| |||||||||||||||||| || |||| ||| ||||  ||||| | | ||||||||||||||||||  ||||| |||||  ||||||| |||||||    
T  38792649 gtgacggagctggtgaatgattttgtattgaaacagaagcttttcgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtga 38792748  T
Q  199 aggagcatgaatcaaa 214  Q
    ||||||| ||||||||    
T  38792749 aggagcacgaatcaaa 38792764  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 39488055 - 39487953
Alignment:
Q  20 gcaagaacttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaatgat 119  Q
    ||||||||| || | |||||||| ||| |||  | ||||||||||| ||||||||||||||||| | || ||||||||  ||||||||||||||||||||    
T  39488055 gcaagaactcgatacaaaagagacggaacttcgtgaagtcatggataacatttcaaaacagaagaaatttgaaagccagatgaaggagctggtgaatgat 39487956  T
Q  120 ttg 122  Q
    |||    
T  39487955 ttg 39487953  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 38793217 - 38793265
Alignment:
Q  162 cttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaat 210  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38793217 cttgagttaaaagagaagcaacatgaaggtcgggtgaaggagcatgaat 38793265  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 39136859 - 39136935
Alignment:
Q  138 cagttcgagagcggaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    ||||| |||| | |||| ||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||||    
T  39136859 cagtttgagaaccgaatcaaggagcttgagtcaaaagagaagcagcatgaaggccgggtgaaggagcatgcatcaaa 39136935  T

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Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 39458417 - 39458503
Alignment:
Q  20 gcaagaacttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaagga 106  Q
    |||||||||  ||| ||||||||  || ||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||||||    
T  39458417 gcaagaactcaagacaaaagagatagaacttcatcaagtcaaggataacatttcaaaacagaagcattttgaaagacaagtgaagga 39458503  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 39415214 - 39415161
Alignment:
Q  151 gaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagc 204  Q
    |||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||    
T  39415214 gaatgaaggagcttgagtcaaaagagaagcaacatgaaggtcgagtgaaggagc 39415161  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 39416186 - 39416129
Alignment:
Q  67 acatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaatgatttggt 124  Q
    ||||||||||||||||| | || |||||||||||||||||||| | ||||||||||||    
T  39416186 acatttcaaaacagaaggaatttgaaagccaagtgaaggagctagggaatgatttggt 39416129  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 39415850 - 39415787
Alignment:
Q  151 gaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    |||| ||||| ||||| | ||||||||||||||||||||| |||||||| ||||||| ||||||    
T  39415850 gaatcaaggagcttgaatcaaaagagaagcagcatgaaggccgggtgaatgagcatgcatcaaa 39415787  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 39390660 - 39390598
Alignment:
Q  152 aatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    |||||||||  |||||| |||||||||||| |||||| | || ||||||||||||||||||||    
T  39390660 aatgaaggagtttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatcaaa 39390598  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 39221679 - 39221740
Alignment:
Q  153 atgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    ||||||||  |||||| |||||||||||| ||||||||  ||||||||||||||| ||||||    
T  39221679 atgaaggagtttgagtcaaaagagaagcaacatgaaggctgggtgaaggagcatggatcaaa 39221740  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 38792567 - 38792626
Alignment:
Q  155 gaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    |||||| |||||||  ||||||||||| |||||||| | |||| ||||||||||||||||    
T  38792567 gaaggaacttgagtcgaaagagaagcaacatgaaggccaggtggaggagcatgaatcaaa 38792626  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 39415598 - 39415535
Alignment:
Q  151 gaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    |||||||||| ||||||  |||||||||||| ||||||||||  |||||||||  |||||||||    
T  39415598 gaatgaaggagcttgaggcaaaagagaagcaacatgaaggtcaagtgaaggagtgtgaatcaaa 39415535  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 39192955 - 39192893
Alignment:
Q  152 aatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    ||||||||| ||||||| ||| |||| ||| |||||||||||||||||| ||  |||||||||    
T  39192955 aatgaaggagcttgagtcaaacgagatgcaacatgaaggtcgggtgaagaagtttgaatcaaa 39192893  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 39198635 - 39198573
Alignment:
Q  152 aatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    ||||||||| ||||||| ||| |||| ||| |||||||||||||||||| ||  |||||||||    
T  39198635 aatgaaggagcttgagtcaaacgagatgcaacatgaaggtcgggtgaagaagtttgaatcaaa 39198573  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 38792923 - 38793016
Alignment:
Q  121 tggtgttgagacaaaagcagttcgagagcggaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    |||| |||| ||| ||||| ||||| |||  ||||||||| |||||||| |||||||| ||  ||||||  ||| ||||||||||||| |||||    
T  38792923 tggtattgaaacagaagcatttcgaaagccaaatgaaggaacttgagttgaaagagaaccaaaatgaagaccggatgaaggagcatgactcaaa 38793016  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 39193152 - 39193103
Alignment:
Q  165 gagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    ||||||||||||| ||| |||||||||||||||||| ||  |||||||||    
T  39193152 gagttaaaagagatgcaacatgaaggtcgggtgaagaagtttgaatcaaa 39193103  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 39198832 - 39198783
Alignment:
Q  165 gagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    ||||||||||||| ||| |||||||||||||||||| ||  |||||||||    
T  39198832 gagttaaaagagatgcaacatgaaggtcgggtgaagaagtttgaatcaaa 39198783  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 39390238 - 39390181
Alignment:
Q  154 tgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatc 211  Q
    |||||||  |||||| |||||||||||| |||||| | || |||||||||||||||||    
T  39390238 tgaaggattttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatc 39390181  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 39451714 - 39451771
Alignment:
Q  157 aggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    |||||||||| ||||| |||| ||| ||||| || ||||||| |||||||||||||||    
T  39451714 aggaccttgacttaaatgagaggcaacatgagggccgggtgatggagcatgaatcaaa 39451771  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 39137302 - 39137346
Alignment:
Q  170 aaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    ||||||||| || |||||||| ||||||| |||||||||||||||    
T  39137302 aaaagagaaacaacatgaaggccgggtgatggagcatgaatcaaa 39137346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 19806852 - 19807042
Alignment:
Q  22 aagaacttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaatgattt 121  Q
    |||||||  ||| |||||||  ||| ||| |||||||||||||| ||||||||||||| ||| | ||||||||||| |||||||||||| ||||||||||    
T  19806852 aagaactaaagacaaaagagttggaacttcatcaagtcatggataacatttcaaaacaaaaggaattggaaagccacgtgaaggagctgatgaatgattt 19806951  T
Q  122 ggtgttgagacaaaagcagttcgagagcggaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatca 212  Q
    ||| |  | ||| ||||| ||||| |||   || ||||| |||||||  ||||||| ||| | |||||| ||  |||||||||||||||||    
T  19806952 ggtatcaaaacagaagcatttcgaaagccatattaaggagcttgagtcgaaagagaggcaacttgaaggccgattgaaggagcatgaatca 19807042  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 19807233 - 19807296
Alignment:
Q  151 gaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaa 214  Q
    |||| ||||| ||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||    
T  19807233 gaatcaaggagcttgagtcaaaagagaagcagcatgaaggccggatgaaggagcatgcatcaaa 19807296  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 17059049 - 17059133
Alignment:
Q  20 gcaagaacttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaag 104  Q
    ||||||||| | || ||||||||  || |||  ||||||||||||| |||||||||||||||||||||| |||||| || |||||    
T  17059049 gcaagaactcgtgacaaaagagagagaacttcgtcaagtcatggataacatttcaaaacagaagcattttgaaagcaaattgaag 17059133  T

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