View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20224_low_2 (Length: 635)
Name: NF20224_low_2
Description: NF20224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20224_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 561; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 24 - 620
Target Start/End: Original strand, 14303489 - 14304085
Alignment:
| Q |
24 |
ttcacgagtccaaggcaaaaaagcatacctttcctgagatcttgaacatttcccccaacacagaagccagtaatgaagacttgcctgatccaacagttcc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14303489 |
ttcacgagtccaaggcaaaaaagcatacctttcctgagatcttgaacatttcccccaacacagaagccagtaatgaagacttgcctgatccaacagttcc |
14303588 |
T |
|
| Q |
124 |
tacaacagcagcatggtcccctttcttaatcaccaattccttaactcgcaaagcctcattctcatccatatcatcccaagaaaattccccatcttttatc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
14303589 |
tacaacagcagcatggtcccctttcttaatcaccaattccttaactcgcaaagcctcattctcatccatatcatcccaagaaaatttcccatcttttatc |
14303688 |
T |
|
| Q |
224 |
tccacagctacatcaccatcgcaattctcctctctttgcactgcattctcatccatttccttactcatcatgaacttatccaacctccctaatgatattg |
323 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
14303689 |
tccacagctacatcaccattacagttctcctctctttgcactgcattctcatccatttccttactcatcatgaacttatccaacctccctaatgatatcg |
14303788 |
T |
|
| Q |
324 |
ttgcttgcgaaatattgataagagcctgtggaaaagtactcataggctcttgaagtatcttgatcactgaagttactgtgaaaacagtgccagcattcag |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
14303789 |
ttgcttgcgaaatattgataagagcctgtggaaaagtactcataggctcttgaagtatcttgatcactgcagttactgtgaaaacagtgccagcattcag |
14303888 |
T |
|
| Q |
424 |
aggaatcctcataaaagttgcaactccaaatgtaagaacagttatagctaaaggagaagtagtcaaaactcccatgttaacagcaaaatagtacaagaat |
523 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
14303889 |
aggaatccccataaaagttgcaactccaaatgtaagaacagttatagctaaaggagaagtagtcaaaactcccatgttcacagcaaaatagtacaagaat |
14303988 |
T |
|
| Q |
524 |
ttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttcccgaagtactcttcccatgcttgaaatttaatcacacgcatgttgttaa |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
14303989 |
ttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttcccgaagtactcttcccacgcttgaaatttaatcacacgcatgttgttaa |
14304085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 47 - 620
Target Start/End: Original strand, 14281754 - 14282327
Alignment:
| Q |
47 |
catacctttcctgagatcttgaacatttcccccaacacagaagccagtaatgaagacttgcctgatccaacagttcctacaacagcagcatggtcccctt |
146 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||||||| ||||||||||||||||| |
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|
| T |
14281754 |
catacctttcctgagatcttgaacatttctcccaacacagaagccaataatgaagacttgcccgatccaactgttcctacaatagcagcatggtcccctt |
14281853 |
T |
|
| Q |
147 |
tcttaatcaccaattccttaactcgcaaagcctcattctcatccatatcatcccaagaaaattccccatcttttatctccacagctacatcaccatcgca |
246 |
Q |
| |
|
||||||| ||||| || | |||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | || |
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|
| T |
14281854 |
tcttaattaccaactcttcaactgtcaacgcctcattctcatcgttatcatcccaagaaaatttcccatcttttatctccacagctacatcaccaccaca |
14281953 |
T |
|
| Q |
247 |
attctcctctctttgcactgcattctcatccatttccttactcatcatgaacttatccaacctccctaatgatattgttgcttgcgaaatattgataaga |
346 |
Q |
| |
|
| |||| ||||||||||| ||| | |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| ||||||||||||||| |
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|
| T |
14281954 |
actctcatctctttgcacagcactatcatccatttccttactcatcatgaactcatccaacctccctaaagatatagttgcttgagaaatattgataaga |
14282053 |
T |
|
| Q |
347 |
gcctgtggaaaagtactcataggctcttgaagtatcttgatcactgaagttactgtgaaaacagtgccagcattcagaggaatcctcataaaagttgcaa |
446 |
Q |
| |
|
||||| || ||||| |||| |||||||||||| |||||||| | ||||||| ||| ||||| ||||| || |||| |||| | | |||||||||||| |
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|
| T |
14282054 |
gcctgagggaaagtcctcagaggctcttgaagaatcttgataatcgaagttattgtaaaaactgtgccggccttcaaaggagttcctataaaagttgcag |
14282153 |
T |
|
| Q |
447 |
ctccaaatgtaagaacagttatagctaaaggagaagtagtcaaaactcccatgttaacagcaaaatagtacaagaatttcccaatccatccatgttcggc |
546 |
Q |
| |
|
|||||| |||||||||| || || || | || |||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282154 |
ttccaaaggtaagaacagctacagttattgaagcagtacccagaattcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggc |
14282253 |
T |
|
| Q |
547 |
ttcacgaaactgttgaatcttgttcccgaagtactcttcccatgcttgaaatttaatcacacgcatgttgttaa |
620 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
14282254 |
ttcacgaaactgttgaatcttgttaccgaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaa |
14282327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 45 - 620
Target Start/End: Original strand, 14319901 - 14320476
Alignment:
| Q |
45 |
agcatacctttcctgagatcttgaacatttcccccaacacagaagccagtaatgaagacttgcctgatccaacagttcctacaacagcagcatggtcccc |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||| |
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|
| T |
14319901 |
agcatacctttcctgagatcttgaacatttctcccaacacagaagccaataatgaagacttgcctgaaccaacagttcctacaatagcagcacggtcccc |
14320000 |
T |
|
| Q |
145 |
tttcttaatcaccaattccttaactcgcaaagcctcattctcatccatatcatcccaagaaaattccccatcttttatctccacagctacatcaccatcg |
244 |
Q |
| |
|
||||||||| ||||| || | ||| ||| ||||||||||||||| |||||||||| ||||||| |||||||||||||||||| |||||||||||||| |
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|
| T |
14320001 |
tttcttaattaccaactcttccactgtcaacgcctcattctcatccttatcatcccatgaaaatttcccatcttttatctccacggctacatcaccatca |
14320100 |
T |
|
| Q |
245 |
caattctcctctctttgcactgcattctcatccatttccttactcatcatgaacttatccaacctccctaatgatattgttgcttgcgaaatattgataa |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||| | |||| |
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|
| T |
14320101 |
caattctcctctctttgcactgcattctcatccatttccttactcaccatgaactcatccaacctccctaaagatattgttgcttgagaaatcattataa |
14320200 |
T |
|
| Q |
345 |
gagcctgtggaaaagtactcataggctcttgaagtatcttgatcactgaagttactgtgaaaacagtgccagcattcagaggaatcctcataaaagttgc |
444 |
Q |
| |
|
|||| || || ||||| |||| |||||||||||| |||||||| | ||||||| ||| || |||||||| ||||||| |||||| | || ||||||| |
|
|
| T |
14320201 |
gagcttgcgggaaagtcctcacaggctcttgaagaatcttgataatcgaagttattgtaaatacagtgccggcattcaaaggaattccaattaaagttga |
14320300 |
T |
|
| Q |
445 |
aactccaaatgtaagaacagttatagctaaaggagaagtagtcaaaactcccatgttaacagcaaaatagtacaagaatttcccaatccatccatgttcg |
544 |
Q |
| |
|
| |||||| ||||||||||||| |||||| || | |||| ||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
14320301 |
agttccaaaggtaagaacagttacagctaatggggcagtacccaaaactcctatgttaactgcaaaatagtacaagaatttcgcaatccatccatgctca |
14320400 |
T |
|
| Q |
545 |
gcttcacgaaactgttgaatcttgttcccgaagtactcttcccatgcttgaaatttaatcacacgcatgttgttaa |
620 |
Q |
| |
|
||||| |||||||||||||| ||||| || |||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
14320401 |
gcttcgcgaaactgttgaattttgttaccaaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaa |
14320476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 48 - 620
Target Start/End: Original strand, 25884586 - 25885158
Alignment:
| Q |
48 |
atacctttcctgagatcttgaacatttcccccaacacagaagccagtaatgaagacttgcctgatccaacagttcctacaacagcagcatggtccccttt |
147 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
25884586 |
atacctgtcctgagatcttgaacatttctcccaacacagaagccaataatgaagacttccctgaaccaacagttcctacaacagcagcatgatccccttt |
25884685 |
T |
|
| Q |
148 |
cttaatcaccaattccttaactcgcaaagcctcattctcatccatatcatcccaagaaaattccccatcttttatctccacagctacatcaccatcgcaa |
247 |
Q |
| |
|
|||||| ||||| || | ||||| || ||| || |||||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25884686 |
cttaattaccaactcttcaactctcagagcgtcgttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcacaa |
25884785 |
T |
|
| Q |
248 |
ttctcctctctttgcactgcattctcatccatttccttactcatcatgaacttatccaacctccctaatgatattgttgcttgcgaaatattgataagag |
347 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
25884786 |
ttctcctctcgttgcactgcattctcatccatttccttactcgtcatgaactcatccaacctccctaaagatattgttgcttgagaaatcatgataagag |
25884885 |
T |
|
| Q |
348 |
cctgtggaaaagtactcataggctcttgaagtatcttgatcactgaagttactgtgaaaacagtgccagcattcagaggaatcctcataaaagttgcaac |
447 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||||||| | ||||||| |||||||||||||||| ||||| ||||| | | |||||||||| |
|
|
| T |
25884886 |
cctgaggaaaagtcctcaaaggctcttgaagtatcttgataatcgaagttatcgtgaaaacagtgccagaattcaaaggaaatccaagaaaagttgcagt |
25884985 |
T |
|
| Q |
448 |
tccaaatgtaagaacagttatagctaaaggagaagtagtcaaaactcccatgttaacagcaaaatagtacaagaatttcccaatccatccatgttcggct |
547 |
Q |
| |
|
| |||| ||||||||||||| | |||| || | || || ||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |||| | |
|
|
| T |
25884986 |
tgcaaaggtaagaacagttacaactaatggtgcagcagacaaaactccaaagttaacagcaaaatagtacatgaatttcccaatccatccatgctcggat |
25885085 |
T |
|
| Q |
548 |
tcacgaaactgttgaatcttgttcccgaagtactcttcccatgcttgaaatttaatcacacgcatgttgttaa |
620 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
25885086 |
tcacgaaactgtttaatcttgttaccgaaatactcttcccaagcttgaaacttaatcacacgcatgttgttaa |
25885158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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