View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20224_low_4 (Length: 479)
Name: NF20224_low_4
Description: NF20224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20224_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 119 - 471
Target Start/End: Complemental strand, 11155754 - 11155402
Alignment:
| Q |
119 |
tagcatctaatagcttt-aaaaatcttttttcagagataatttcttcatcgtcctatgcaatgacttaattttgatgattgatgttggtggctgattgat |
217 |
Q |
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| T |
11155754 |
tagcatctaatagcttttaaaaatcttttttcagagataatttcttcatcgtcctatgcaatgacttaattttgatgattgatgttggtggctgattgat |
11155655 |
T |
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| Q |
218 |
ggagagnnnnnnnggttttatgttgattgatgaaaggctattaacttactattagtttttcttccatgtcaatacattttagtatttttagaggcatatt |
317 |
Q |
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| T |
11155654 |
ggagagtttttttggttttatgttgattgatgagaggctattaacttactattagtttttcttccatgtcaatatattttagtatttttagaggcatatt |
11155555 |
T |
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| Q |
318 |
ttaaggccttcaaacttatgtaggtgaattacatgtttgttgctgtgttgataaattgatcttaatttgtgatgttggtgaattacttacttataggttt |
417 |
Q |
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| T |
11155554 |
ttaaggccttcaaacttatgtagatgaattacatg-ttgctgctgtgttgataaattgatcttaatttgtgatgttgctgaattacttacttataggttt |
11155456 |
T |
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| Q |
418 |
aatgctcggaacaaattgattctatggcaccattttagtgttttgtgatgatgt |
471 |
Q |
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| T |
11155455 |
aatgctaggaacaaattgattctatggcagcattttagtgttttgtgatgatgt |
11155402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 232 - 393
Target Start/End: Complemental strand, 36245789 - 36245635
Alignment:
| Q |
232 |
gttttatgttgattgatgaaaggctattaacttactattagtttttcttccatgtcaatacattttagtatttttagaggcatattttaaggccttcaaa |
331 |
Q |
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| T |
36245789 |
gttttatgtcgattgatgagaggctattaacttactattagtttttct---atgtcaatacattatagtatttttagagtcatacttcaaatccttcaaa |
36245693 |
T |
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| Q |
332 |
cttatgtaggtgaattacatgtttgttgctgtgttgataaattgatcttaatttgtgatgtt |
393 |
Q |
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| T |
36245692 |
cttatgtaggtgaattaca----tgttgatgtgttgatatattgatcttaatttgtgttgtt |
36245635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 36246089 - 36246041
Alignment:
| Q |
19 |
gtgatgttggtgattcatgtattcctc-ggtatgtgaattgtatatcat |
66 |
Q |
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| T |
36246089 |
gtgatgttggtgattcatgtattcctctggtatgtgaattgtttatcat |
36246041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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