View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20224_low_6 (Length: 390)
Name: NF20224_low_6
Description: NF20224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20224_low_6 |
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| [»] scaffold0294 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 109 - 382
Target Start/End: Original strand, 15755312 - 15755580
Alignment:
| Q |
109 |
ttcttcgtttcactgtttcacgtatcatcgccttcgtctttcttcatactctattttctcaattttactactttctgcttcgtcttcatcatgcctccaa |
208 |
Q |
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| T |
15755312 |
ttcttcgtttcaccgtttcatgcatcatcgccttcggctttcttcatactctgttttctcaattctactactctctgcttcgtcctcatcatgcctccaa |
15755411 |
T |
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| Q |
209 |
gacaagctcctcaagtggttcaacggaacactgattcaccttactacgtgcatccaagtgaaaatcctggctctgtgttagttacgcctcttcttgacgg |
308 |
Q |
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| T |
15755412 |
gagaagatcctcaagttgttcaaccaaacactgattcaccttactacatgcatccaagtgaaaatcctggctct-tgttagttacacctcttcttgacgg |
15755510 |
T |
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| Q |
309 |
ttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctttcctttgatgatg |
382 |
Q |
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| T |
15755511 |
ttctaactacctc----ggcatcattctatgaaacgcgctttaggcgccaagaacaagctttcctttgttgatg |
15755580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 15755152 - 15755270
Alignment:
| Q |
1 |
tgagaagagtttgttacgattcagttagcttctgccattgatgcgtgaacttcaagattttcatcttttctcaattcatctcgatttcgtgaagaatgac |
100 |
Q |
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| T |
15755152 |
tgagaagagtttgttacgattcagttagctttcaccattgatgcgtgaacttcaagcttttcatcttttctcaattcatctcgatttcgtgaagaatcac |
15755251 |
T |
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| Q |
101 |
accgattattcttcgtttc |
119 |
Q |
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| T |
15755252 |
accgattcttcttcgtttc |
15755270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 6130 - 5962
Alignment:
| Q |
109 |
ttcttcgtttcactgtttcacgtatcatcgccttcgtctttcttcatactctattttctcaattttactacttt-ctgcttcgtcttcatcatgcctcca |
207 |
Q |
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|||||| |||||| |||||||| |||||| |||||| ||||||| | |||| ||||||||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
6130 |
ttcttcttttcaccgtttcacgcatcatctacttcgtttttcttcttcctctgttttctcaattctactacttttctgcttcgtcctcatcatgcctcca |
6031 |
T |
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| Q |
208 |
agacaagctcctcaagtggttcaacggaacactgattcaccttactacgtgcatccaagtgaaaatcct |
276 |
Q |
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| T |
6030 |
agacaagctcctcgggttattcaaccaaacactgattcaccttactatgtgcattcgagtgaaaatcct |
5962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 6289 - 6197
Alignment:
| Q |
1 |
tgagaagagtttgttacgattcagttagcttctgccattgatgcgtgaacttcaagattttcatcttttctcaattcatctcgatttcgtgaa |
93 |
Q |
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| T |
6289 |
tgagaagagtttgttacgattcagttagcttccgccattgatgtgtgagcttcaatcttttcatgctttctcaatttctctcgatttcgtgaa |
6197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 191 - 382
Target Start/End: Original strand, 17118153 - 17118344
Alignment:
| Q |
191 |
tcttcatcatgcctccaagacaagctcctcaagtggttcaacggaacactgattcaccttactacgtgcatccaagtgaaaatcctggctctgtgttagt |
290 |
Q |
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|||||||||| ||||| | ||||||||||| | |||||| |||||||||||||| || || |||||||| | |||| || ||| |||| |||| |
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| T |
17118153 |
tcttcatcatccctcctcgtcaagctcctcagattgttcaatcaaacactgattcaccgtattatgtgcatcctaatgaaggaccaagctatgtgatagt |
17118252 |
T |
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| Q |
291 |
tacgcctcttcttgacggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctttcctttgatgatg |
382 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||||||||||| || | ||||| || |||||||| |||||||||| ||||| |
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| T |
17118253 |
tacacctcttcttgatggttctaactacctcgcatggcatcgttctatgaagcgcccattaggagcgaagaacaaactttcctttgttgatg |
17118344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 341
Target Start/End: Complemental strand, 13139970 - 13139865
Alignment:
| Q |
236 |
acactgattcaccttactacgtgcatccaagtgaaaatcctggctctgtgttagttacgcctcttcttgacggttctaactacctcgcatggcatcgttc |
335 |
Q |
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| T |
13139970 |
acactgattttccttattacgtgcatcctagtgaaggacctaactttgtgctagttacgcctcttcttgatggttccaactacctcgcatgaaatcgttc |
13139871 |
T |
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| Q |
336 |
tatgaa |
341 |
Q |
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|||||| |
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| T |
13139870 |
tatgaa |
13139865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 17117910 - 17117978
Alignment:
| Q |
1 |
tgagaagagtttgttacgattcagttagcttctgccattgatgcgtgaacttcaagatt-ttcatcttt |
68 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||| ||| | ||||| || ||||||||| |
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| T |
17117910 |
tgagaggagtttgttacgattcagttagcttccgccattgatgcatgatcctcaagcttcttcatcttt |
17117978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 369
Target Start/End: Original strand, 26628696 - 26628758
Alignment:
| Q |
307 |
ggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctt |
369 |
Q |
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| T |
26628696 |
ggttctaactacctcgcatggagtcgttctatgcaacgtgctttaggtgccaagaataagctt |
26628758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 369
Target Start/End: Original strand, 26734672 - 26734734
Alignment:
| Q |
307 |
ggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctt |
369 |
Q |
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| T |
26734672 |
ggttctaactacctcgcatggagtcgttctatgcaacgtgctttaggtgccaagaataagctt |
26734734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13140209 - 13140166
Alignment:
| Q |
1 |
tgagaagagtttgttacgattcagttagcttctgccattgatgc |
44 |
Q |
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| T |
13140209 |
tgagaggagttacttacgattcagttagcttctgccattgatgc |
13140166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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