View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20224_low_7 (Length: 362)

Name: NF20224_low_7
Description: NF20224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20224_low_7
NF20224_low_7
[»] chr8 (8 HSPs)
chr8 (13-361)||(38609135-38609483)
chr8 (13-361)||(38793918-38794266)
chr8 (95-362)||(38120719-38120989)
chr8 (140-250)||(34592844-34592957)
chr8 (13-72)||(34592970-34593029)
chr8 (106-154)||(38287450-38287498)
chr8 (35-71)||(38609502-38609538)
chr8 (35-71)||(38794285-38794321)
[»] chr4 (2 HSPs)
chr4 (95-361)||(28730296-28730562)
chr4 (12-208)||(33078483-33078658)


Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 38609483 - 38609135
Alignment:
Q  13 agcacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaactac 112  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38609483 agcacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcactttagtacatgaacaacagtgtaactgtaaacttattaactac 38609384  T
Q  113 aaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctca 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38609383 aaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctca 38609284  T
Q  213 accattggcttgacctgaggcatgggagacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggattcttccg 312  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  38609283 accattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttccg 38609184  T
Q  313 tcgcctgaccagcagaatctgatacagtagcagctctggctccgacacc 361  Q
    |||||||||| | ||||||| ||| ||| |  |||| |||||| |||||    
T  38609183 tcgcctgacctggagaatctaataaagttgatgctccggctccaacacc 38609135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 38794266 - 38793918
Alignment:
Q  13 agcacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaactac 112  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38794266 agcacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcactttagtacatgaacaacagtgtaactgtaaacttattaactac 38794167  T
Q  113 aaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctca 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38794166 aaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctca 38794067  T
Q  213 accattggcttgacctgaggcatgggagacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggattcttccg 312  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  38794066 accattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttccg 38793967  T
Q  313 tcgcctgaccagcagaatctgatacagtagcagctctggctccgacacc 361  Q
    |||||||||| | ||||||| ||| ||| |  |||| |||||| |||||    
T  38793966 tcgcctgacctggagaatctaataaagttgatgctccggctccaacacc 38793918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 95 - 362
Target Start/End: Original strand, 38120719 - 38120989
Alignment:
Q  95 tgtaaacttattaactacaaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcat---catcatcgaagcatcgcactcacagg 191  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  38120719 tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacagg 38120818  T
Q  192 ccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaa 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||     
T  38120819 ccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcag 38120918  T
Q  292 gagcagagcaggattcttccgtcgcctgaccagcagaatctgatacagtagcagctctggctccgacaccc 362  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38120919 gagcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacaccc 38120989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 140 - 250
Target Start/End: Complemental strand, 34592957 - 34592844
Alignment:
Q  140 agaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatg 236  Q
    |||||||| ||||||||||||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| |    
T  34592957 agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacg 34592858  T
Q  237 ggagacacacctgc 250  Q
    ||||||||||||||    
T  34592857 ggagacacacctgc 34592844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 34593029 - 34592970
Alignment:
Q  13 agcacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcacttt 72  Q
    |||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  34593029 agcacaaagccacaaactaaacaacaatgcaagttaactacaaattcagagtttcacttt 34592970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 38287498 - 38287450
Alignment:
Q  106 taactacaaatttaatagagattcacttcagcagagaaagaactaaacc 154  Q
    ||||||||| ||| |||||| |||||||||||||| |||||| ||||||    
T  38287498 taactacaagtttcatagagtttcacttcagcagaaaaagaagtaaacc 38287450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 38609538 - 38609502
Alignment:
Q  35 aacaatgtgagttaactacaaattcagagtttcactt 71  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  38609538 aacaatgtgaattaactacaaattcaaagtttcactt 38609502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 38794321 - 38794285
Alignment:
Q  35 aacaatgtgagttaactacaaattcagagtttcactt 71  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  38794321 aacaatgtgaattaactacaaattcaaagtttcactt 38794285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 95 - 361
Target Start/End: Original strand, 28730296 - 28730562
Alignment:
Q  95 tgtaaacttattaactacaaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca 194  Q
    |||||||||||||||||||||||| ||| || || |||||||||||||||||| |||| |||||||||| |||| ||| || |||| |||||||||||||    
T  28730296 tgtaaacttattaactacaaatttcatatagttttacttcagcagagaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggcca 28730395  T
Q  195 tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagag 294  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||||    
T  28730396 tggtgatcttcaatctcaaacattggcctgacctgaggcatgggagacacacctgttgcagcagtgacatcagcagcacagccaccacgcccatcaagag 28730495  T
Q  295 cagagcaggattcttccgtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacc 361  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28730496 cagagcaggtttcttcagtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacc 28730562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 33078658 - 33078483
Alignment:
Q  12 gagcacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaacta 111  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||      ||||||||||||||||    
T  33078658 gagcacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcacttttgtacatgaacaacagt------gtaaacttattaacta 33078565  T
Q  112 caaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaat 208  Q
    |||||||                  ||||||||||| |||||||| |||||||||||||||   ||||||||||| |||||| |||||||||||||||||    
T  33078564 caaattt------------------cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat 33078483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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