View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20224_low_9 (Length: 336)
Name: NF20224_low_9
Description: NF20224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20224_low_9 |
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| [»] scaffold0038 (5 HSPs) |
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| [»] chr6 (7 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0038 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 115 - 336
Target Start/End: Original strand, 34381 - 34605
Alignment:
| Q |
115 |
ggtacttaggaaatggtaaagaaggttcacttacaatgatctttgatcaataagtccttttaagtgcaaccctgttgccattttttcactt---aattta |
211 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34381 |
ggtacttaggaaatggtaaggaaggttcacttacaatgatctttgatcaataagtccttttaagtgcaaccctgttgccattttttcacttcttaattta |
34480 |
T |
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| Q |
212 |
ttgagaccctatatatacactcatccacgttttaacctctcatactcttcttacttcctttttgttctctactctcatgactctgcttcaatcatccgtc |
311 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34481 |
ttgagaccctatatatacactcatctacgttttaacctctcatactcttcttacttcctttttgttctctactctcatggctctgcttcaatcatccgtc |
34580 |
T |
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| Q |
312 |
tccccctcttcttccttctcctatg |
336 |
Q |
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||||||||||||| |||||||||| |
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| T |
34581 |
cccccctcttcttctttctcctatg |
34605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 336
Target Start/End: Original strand, 116589 - 116676
Alignment:
| Q |
249 |
tctcatactcttcttacttcctttttgttctctactctcatgactctgcttcaatcatccgtctccccctcttcttccttctcctatg |
336 |
Q |
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|||||||||||||| | ||||| ||| ||| ||||||||||| |||| |||||||||||| |||| |||| |||||||| ||||||| |
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| T |
116589 |
tctcatactcttctcatttcctctttattcactactctcatggctctacttcaatcatccatctcttcctcctcttccttttcctatg |
116676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 336
Target Start/End: Original strand, 27239 - 27328
Alignment:
| Q |
249 |
tctcatactcttcttacttcctttttgttctctactctcat--gactctgcttcaatcatccgtctccccctcttcttccttctcctatg |
336 |
Q |
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|||||||| ||| ||||||||||| | ||||||| |||||| | || ||||||||||||||||||| ||| ||||||||||||| |||| |
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| T |
27239 |
tctcatacacttattacttcctttctattctctattctcatatggctatgcttcaatcatccgtctctcccccttcttccttctcttatg |
27328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 22321 - 22364
Alignment:
| Q |
115 |
ggtacttaggaaatggtaaagaaggttcacttacaatgatcttt |
158 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
22321 |
ggtacttaggaaatggtaaggaaggttcacttgcaatgatcttt |
22364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 34282 - 34313
Alignment:
| Q |
18 |
agttcaatctgtgaaactttgattgttacacg |
49 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34282 |
agttcaatctgtgaaactttgattgttacacg |
34313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 115 - 336
Target Start/End: Original strand, 28234220 - 28234444
Alignment:
| Q |
115 |
ggtacttaggaaatggtaaagaaggttcacttacaatgatctttgatcaataagtccttttaagtgcaaccctgttgccattttttcactt---aattta |
211 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28234220 |
ggtacttaggaaatggtaaggaaggttcacttacaatgatctttgatcaataagtccttttaagtgcaaccctgttgccattttttcacttcttaattta |
28234319 |
T |
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| Q |
212 |
ttgagaccctatatatacactcatccacgttttaacctctcatactcttcttacttcctttttgttctctactctcatgactctgcttcaatcatccgtc |
311 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28234320 |
ttgagaccctatatatacactcatctacgttttaacctctcatactcttcttacttcctttttgttctctactctcatggctctgcttcaatcatccgtc |
28234419 |
T |
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| Q |
312 |
tccccctcttcttccttctcctatg |
336 |
Q |
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||||||||||||| |||||||||| |
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| T |
28234420 |
cccccctcttcttctttctcctatg |
28234444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 212 - 336
Target Start/End: Original strand, 28180870 - 28180994
Alignment:
| Q |
212 |
ttgagaccctatatatacactcatccacgttttaacctctcatactcttcttacttcctttttgttctctactctcatgactctgcttcaatcatccgtc |
311 |
Q |
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|||| ||||||||||||||||||||||| || | || ||||||||| |||||||||||||||| ||||||| ||||||| || ||||||||||||||||| |
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| T |
28180870 |
ttgaaaccctatatatacactcatccacattcttacttctcatactattcttacttcctttttattctctattctcatggctatgcttcaatcatccgtc |
28180969 |
T |
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| Q |
312 |
tccccctcttcttccttctcctatg |
336 |
Q |
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||| | || |||||||||||||||| |
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| T |
28180970 |
tcctcatcctcttccttctcctatg |
28180994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 212 - 336
Target Start/End: Original strand, 28185122 - 28185246
Alignment:
| Q |
212 |
ttgagaccctatatatacactcatccacgttttaacctctcatactcttcttacttcctttttgttctctactctcatgactctgcttcaatcatccgtc |
311 |
Q |
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|||| ||||||||||||||||||||||| || | || ||||||||| |||||||||||||||| ||||||| ||||||| || ||||||||||||||||| |
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| T |
28185122 |
ttgaaaccctatatatacactcatccacattcttacttctcatactattcttacttcctttttattctctattctcatggctatgcttcaatcatccgtc |
28185221 |
T |
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| Q |
312 |
tccccctcttcttccttctcctatg |
336 |
Q |
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||| | || |||||||||||||||| |
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| T |
28185222 |
tcctcatcctcttccttctcctatg |
28185246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 336
Target Start/End: Original strand, 28325274 - 28325361
Alignment:
| Q |
249 |
tctcatactcttcttacttcctttttgttctctactctcatgactctgcttcaatcatccgtctccccctcttcttccttctcctatg |
336 |
Q |
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|
|||||||||||||| | ||||| ||| ||| ||||||||||| |||| |||||||||||| |||| |||| |||||||| ||||||| |
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| T |
28325274 |
tctcatactcttctcatttcctctttattcactactctcatggctctacttcaatcatccatctcttcctcctcttccttttcctatg |
28325361 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 336
Target Start/End: Original strand, 28226741 - 28226830
Alignment:
| Q |
249 |
tctcatactcttcttacttcctttttgttctctactctcat--gactctgcttcaatcatccgtctccccctcttcttccttctcctatg |
336 |
Q |
| |
|
|||||||| ||| ||||||||||| | ||||||| |||||| | || ||||||||||||||||||| ||| ||||||||||||| |||| |
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| T |
28226741 |
tctcatacacttattacttcctttctattctctattctcatatggctatgcttcaatcatccgtctctcccccttcttccttctcttatg |
28226830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 28221823 - 28221866
Alignment:
| Q |
115 |
ggtacttaggaaatggtaaagaaggttcacttacaatgatcttt |
158 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
28221823 |
ggtacttaggaaatggtaaggaaggttcacttgcaatgatcttt |
28221866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 28234121 - 28234152
Alignment:
| Q |
18 |
agttcaatctgtgaaactttgattgttacacg |
49 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
28234121 |
agttcaatctgtgaaactttgattgttacacg |
28234152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 259 - 336
Target Start/End: Complemental strand, 58666 - 58589
Alignment:
| Q |
259 |
ttcttacttcctttttgttctctactctcatgactctgcttcaatcatccgtctccccctcttcttccttctcctatg |
336 |
Q |
| |
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|||||||||||||||| ||||||||| ||||| || |||||||||||||| |||| |||| |||||||||||||||| |
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| T |
58666 |
ttcttacttcctttttattctctactgtcatggctatgcttcaatcatccatctcttcctcctcttccttctcctatg |
58589 |
T |
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