View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20225_low_1 (Length: 805)

Name: NF20225_low_1
Description: NF20225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20225_low_1
NF20225_low_1
[»] chr2 (1 HSPs)
chr2 (147-788)||(38321361-38322008)
[»] chr6 (7 HSPs)
chr6 (37-172)||(1905506-1905641)
chr6 (1-172)||(1895631-1895802)
chr6 (1-80)||(1911087-1911166)
chr6 (1-71)||(1884137-1884207)
chr6 (1-71)||(1890781-1890851)
chr6 (1-74)||(1878125-1878198)
chr6 (1-42)||(1902042-1902083)
[»] chr4 (2 HSPs)
chr4 (616-664)||(2888809-2888857)
chr4 (275-348)||(16292863-16292936)
[»] chr8 (1 HSPs)
chr8 (603-671)||(11319352-11319421)
[»] chr3 (3 HSPs)
chr3 (613-670)||(564852-564909)
chr3 (616-664)||(30421619-30421667)
chr3 (613-667)||(532271-532325)
[»] chr5 (2 HSPs)
chr5 (609-670)||(38048863-38048925)
chr5 (616-666)||(38726788-38726838)
[»] chr7 (1 HSPs)
chr7 (616-668)||(34412168-34412221)
[»] chr1 (2 HSPs)
chr1 (616-664)||(1273523-1273569)
chr1 (600-668)||(31280510-31280579)


Alignment Details
Target: chr2 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 147 - 788
Target Start/End: Complemental strand, 38322008 - 38321361
Alignment:
Q  147 tgtttggattgacggtgagtttgacacaaaaactata-----gtttagggctttaacaaaatcatggtgctactgtgtcaaactcatcgttgttccaaac 241  Q
    ||||||||| |||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38322008 tgtttggatcgacggtgagtttgacacaaaaactatactttagtttagggctttaacaaaatcatggtgctactgtgtcaaactcatcattgttccaaac 38321909  T
Q  242 atgcc-atagattagataggtaggaagcaatctttacttgtgccttcggatataggagagttgagttaggataaattcacagaactggtctaacaattca 340  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321908 atgtcgatagattagataggtaggaagcaatctttacttgtgccttcggatataggagagttgagttaggataaattcacagaactggtctaacaattca 38321809  T
Q  341 tatgcagctgccaagctttcatctttcactagctgctcaacctaaaatttcgacaaaaactgttgaaattaaagcagtattaaactaagtcactaaatat 440  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38321808 tatgcagctgccaagctttcatctttcactagctgctcaacctgaaattttgacaaaaactgttgaaattaaagcagtattaagctaagtcactaaatat 38321709  T
Q  441 aatacccatcaatggttcctactttcattactataactggcatatagattttcagatttccacctaaagnnnnnnngtaattgttcggcaggactcatag 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| |||||||||||    
T  38321708 aatacccatcaatggttcctactttcattactataactggcatatagattttcagatttccacctaaagtttttttgtaattgttcggtaggactcatag 38321609  T
Q  541 ttcacagataaatggacaagttgtttgagccggtgaatattgagttcaagtgtaatatcgtaaaatgaaccataatatttaaacgcaagttgtaaactgt 640  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38321608 ttcacagataaatggacaagtcgtttgagccggtgaatattgagttcaagtgtaatatcgtaaaatgaaccataatatttaaacgcaagttgtaaactgg 38321509  T
Q  641 aactctaagcttgaataatagaaaggtactatagtcggaaacacatgcacaattgaccgaaccctgcaataaaatttgtttgcgttttcgtatctgtttt 740  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  38321508 aactctaagcttgaataatagaaaggtaatatagtcggaaacacatgcacaattgaccgaaccctgaaataaaatttgtttgcgttttggtatctgtttt 38321409  T
Q  741 cttctgaaccaaactgttgttctagcagtaatgctagaaagaacatac 788  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38321408 cttctgaaccaaactgttgttctagcagtaatggtagaaagaacatac 38321361  T

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Target: chr6 (Bit Score: 132; Significance: 4e-68; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 37 - 172
Target Start/End: Original strand, 1905506 - 1905641
Alignment:
Q  37 gttggtacttctgttcttcttcctgtcactcttttcaatagaagtagaaggttcacatttatttattgcaatattcatcaacatacaacatatgtgtata 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1905506 gttggtacttctgttcttcttcctgtcactcttttcaatagaagtagaaggttcacatttatttattgcaatattcatcaacatacaacatatgtatata 1905605  T
Q  137 acttggtgtctgtttggattgacggtgagtttgaca 172  Q
    ||||||||||||||||||||||||||||||||||||    
T  1905606 acttggtgtctgtttggattgacggtgagtttgaca 1905641  T

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Target: chr6; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 1895631 - 1895802
Alignment:
Q  1 atgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttcttcctgtcactcttttcaatagaagtagaaggttcacatttattt 100  Q
    |||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |    
T  1895631 atgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttcttcttcctgtcacacttttcactagaagtagaaggttcacatttatct 1895730  T
Q  101 attgcaatattcatcaacatacaacatatgtgtataacttggtgtctgtttggattgacggtgagtttgaca 172  Q
    |||||||| ||||| ||||| |||||||| | |||||||| ||   |||||| |||||||||||||||||||    
T  1895731 attgcaattttcattaacattcaacatatttatataacttagtaaatgtttgaattgacggtgagtttgaca 1895802  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 1911087 - 1911166
Alignment:
Q  1 atgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttcttcctgtcactcttttcaatagaag 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  1911087 atgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttctccctgtcactcttttcactagaag 1911166  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1884137 - 1884207
Alignment:
Q  1 atgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttcttcctgtcactctttt 71  Q
    |||||||||||||||||| |||| ||||||||||||||||  |||||| |||| |||||| ||||| ||||    
T  1884137 atgaacaatcatgtctttgttgcctatgcttatgctgttgcaacttcttttctccttcctatcactttttt 1884207  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1890781 - 1890851
Alignment:
Q  1 atgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttcttcctgtcactctttt 71  Q
    |||||||||||||||||| |||| |||||||||||| |||||||| || |||| |||||| ||||| ||||    
T  1890781 atgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcactttttt 1890851  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1878125 - 1878198
Alignment:
Q  1 atgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttcttcctgtcactcttttcaa 74  Q
    ||||||||  |||| ||| |||| ||||||||||||||||||||||||||||| |||||| ||||  |||||||    
T  1878125 atgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttctccttcctatcacctttttcaa 1878198  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1902042 - 1902083
Alignment:
Q  1 atgaacaatcatgtctttattgcttatgcttatgctgttggt 42  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  1902042 atgaacaaccatgtctttattgcttatgcttatgctgttggt 1902083  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 616 - 664
Target Start/End: Complemental strand, 2888857 - 2888809
Alignment:
Q  616 tatttaaacgcaagttgtaaactgtaactctaagcttgaataatagaaa 664  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  2888857 tatttaaacacaagttgtaatctgtaactctaagcttgaataatagaaa 2888809  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 16292863 - 16292936
Alignment:
Q  275 tacttgtgccttcggatataggagagttgagttaggataaattcacagaactggtctaacaattcatatgcagc 348  Q
    ||||||||| ||| |||||| ||||||||    |||||||||||| ||||||| ||||||| ||||||||||||    
T  16292863 tacttgtgctttctgatatatgagagttggtgaaggataaattcaaagaactgatctaacatttcatatgcagc 16292936  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 603 - 671
Target Start/End: Original strand, 11319352 - 11319421
Alignment:
Q  603 aaatgaaccataatatttaaacgcaagttgtaaactgtaa-ctctaagcttgaataatagaaaggtacta 671  Q
    ||||||||| |  ||||||| | |||||||||| |||||| |||||||||||||||||||||||||||||    
T  11319352 aaatgaaccgtcgtatttaagcacaagttgtaatctgtaaactctaagcttgaataatagaaaggtacta 11319421  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 670
Target Start/End: Complemental strand, 564909 - 564852
Alignment:
Q  613 taatatttaaacgcaagttgtaaactgtaactctaagcttgaataatagaaaggtact 670  Q
    |||||||||||| ||||||||||  |||||||||||   |||||||||||||||||||    
T  564909 taatatttaaacacaagttgtaatttgtaactctaaaagtgaataatagaaaggtact 564852  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 664
Target Start/End: Original strand, 30421619 - 30421667
Alignment:
Q  616 tatttaaacgcaagttgtaaactgtaactctaagcttgaataatagaaa 664  Q
    ||||||||| || ||||||| |||||||| |||||||||||||||||||    
T  30421619 tatttaaacacatgttgtaatctgtaactttaagcttgaataatagaaa 30421667  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 613 - 667
Target Start/End: Complemental strand, 532325 - 532271
Alignment:
Q  613 taatatttaaacgcaagttgtaaactgtaactctaagcttgaataatagaaaggt 667  Q
    |||||||||||| ||||||||||  |||||||||||   ||||||||||||||||    
T  532325 taatatttaaacacaagttgtaatttgtaactctaaaagtgaataatagaaaggt 532271  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 609 - 670
Target Start/End: Original strand, 38048863 - 38048925
Alignment:
Q  609 accataatatttaaacgcaagttgtaaactgtaa-ctctaagcttgaataatagaaaggtact 670  Q
    |||||| ||||||||| |||||||||| |||||| |||| | ||||||||||||||| |||||    
T  38048863 accatagtatttaaacacaagttgtaatctgtaaactcttaacttgaataatagaaatgtact 38048925  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 616 - 666
Target Start/End: Complemental strand, 38726838 - 38726788
Alignment:
Q  616 tatttaaacgcaagttgtaaactgtaactctaagcttgaataatagaaagg 666  Q
    ||||||||| |||||||||| || |||| ||||| ||||||||||||||||    
T  38726838 tatttaaacacaagttgtaatctctaaccctaagtttgaataatagaaagg 38726788  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 668
Target Start/End: Complemental strand, 34412221 - 34412168
Alignment:
Q  616 tatttaaacgcaagttgtaaactgtaa-ctctaagcttgaataatagaaaggta 668  Q
    ||||||||| ||| |||||| |||||| | ||||||||||||||||||||||||    
T  34412221 tatttaaacacaaattgtaatctgtaaaccctaagcttgaataatagaaaggta 34412168  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 664
Target Start/End: Original strand, 1273523 - 1273569
Alignment:
Q  616 tatttaaacgcaagttgtaaactgtaactctaagcttgaataatagaaa 664  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||||||||    
T  1273523 tatttaaacacaagttgtaa--tgtaactctaagcttgactaatagaaa 1273569  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 668
Target Start/End: Original strand, 31280510 - 31280579
Alignment:
Q  600 gtaaaatgaaccataatatttaaacgcaagttgtaaactgt-aactctaagcttgaataatagaaaggta 668  Q
    |||||||| ||| |||||||||||| ||||||| ||  ||| ||| ||||||||| ||||||||||||||    
T  31280510 gtaaaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaaggta 31280579  T

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