View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20225_low_12 (Length: 220)
Name: NF20225_low_12
Description: NF20225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20225_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 49472830 - 49472634
Alignment:
| Q |
1 |
ttgacaagatccttttttgtcctagatttctccgtttcatcaacgatttcaatttcctcttcctacaataataataatttcaaaatacatgaggcattca |
100 |
Q |
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| T |
49472830 |
ttgacaagatccttttttgtcctagatttctccgtttcatcaacgatttcaatttccacttcctacaataataataatttcaaaatacatgaggcattca |
49472731 |
T |
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| Q |
101 |
aataacaaaagataaatcgatgaaccaagtcggtgtcgg-ggggttctcgtaccttagaaacattaacattgtttccctctattttgccatttgatc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49472730 |
aataacaaaagataaatcgatgaaccaagtcggtgtcgggggggttctcgtaccttagaaacattaacattgtttccctctattttgccatttgatc |
49472634 |
T |
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