View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20225_low_3 (Length: 483)
Name: NF20225_low_3
Description: NF20225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20225_low_3 |
 | |
|
| [»] scaffold0341 (3 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 8e-96; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 6516303 - 6516501
Alignment:
| Q |
1 |
acaataaggtgcaatgtttcaacttaattaccttcaaaccttttctttggcttccttactttcaaatagatgcatataaaaatgaagaccatagcaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6516303 |
acaataaggtgcaatgtttcaacttaattaccttcaaaccttttctttggcttccttactttcaaatagatgcatataaaaatgaagaccatagcaacaa |
6516402 |
T |
|
| Q |
101 |
gagcaattggtactcctatagcgatgccaatggtagaaccataattgttgctttttcctgcacaaacnnnnnnnctccgtggggacatttcatatgtac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6516403 |
gagcaattggtactcctatagcgatgccaatggtagaaccataattgttgctttttcctgcacaaacaaaaaaactccgtggggacatttcatatgtac |
6516501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 6498599 - 6498751
Alignment:
| Q |
12 |
caatgtttcaacttaattaccttcaaaccttttctttggcttccttactttcaaatagatgcatataaaaatgaagaccatagcaacaagagcaattggt |
111 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6498599 |
caatgtttcagcttaatcaccttcaaacgttttctttggcttccttattcttaaatagatgcagataaaaatgaagaccatagcaacaagagcaattgga |
6498698 |
T |
|
| Q |
112 |
actcctatagcgatgccaatggtagaaccataattgttgctttttcctgcacaaac |
167 |
Q |
| |
|
||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
6498699 |
actcctacagcgatgccaatggtagcacc---attgttgctttttcctgcacaaac |
6498751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 367 - 464
Target Start/End: Original strand, 6516685 - 6516782
Alignment:
| Q |
367 |
taacaccaagattcattttaataagctgagggccaagatgaaattaataaataaaactttctataggtctattgataagtttatgaggacctggatag |
464 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6516685 |
taacaccaagattcattttaataagttgaggaccaagatgaaattaataaataaaactttctataggtctattgataagtttatgaagacctggatag |
6516782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 287 - 371
Target Start/End: Original strand, 6516582 - 6516666
Alignment:
| Q |
287 |
ttgtttttcaaattaaataactacacttaataagaggaaatttaatgtatcaaggatactaagacacggaaattattttttaaca |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6516582 |
ttgtttttcaaattaaataactacacttaataagaggaaatttaatgtatcaaggatactaagacacggaaattattttttaaca |
6516666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 6505438 - 6505576
Alignment:
| Q |
24 |
ttaattaccttcaaaccttttctttggcttccttactttcaaatagatgcatataaaaatgaagaccatagcaacaagagcaattggtactcctatagcg |
123 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||| | | ||||||||||| |||||||||||||||||| |||||| |||||||||||| |||| |||| |
|
|
| T |
6505438 |
ttaattaccttcacacgttttctttggctttcttagtcttaaatagatgcagataaaaatgaagaccataacaacaatagcaattggtacccctagagcg |
6505537 |
T |
|
| Q |
124 |
atgccaatggtagaaccataattgttgctttttcctgcacaa |
165 |
Q |
| |
|
|| || ||||||| || ||||||||||||||||||||| |
|
|
| T |
6505538 |
atacctatggtagtac---tgttgttgctttttcctgcacaa |
6505576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 6511794 - 6511902
Alignment:
| Q |
28 |
ttaccttcaaaccttttctttggcttccttactttcaaatagatgcatataaaaatgaagaccatagcaacaagagcaattggtactcctatagcgatgc |
127 |
Q |
| |
|
||||||||||||||||| | ||||| ||| ||| | | ||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
6511794 |
ttaccttcaaaccttttatctggctccctcactcttatataaatgcagataaaaatgaagaccataagaacaagagcaattggtactcctacagcaatgc |
6511893 |
T |
|
| Q |
128 |
caatggtag |
136 |
Q |
| |
|
|||| |||| |
|
|
| T |
6511894 |
caatagtag |
6511902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 6505685 - 6505736
Alignment:
| Q |
293 |
ttcaaattaaataactacacttaataagaggaaatttaatgtatcaaggata |
344 |
Q |
| |
|
|||||| |||||||||| ||| | |||||| ||||||||||||||||||||| |
|
|
| T |
6505685 |
ttcaaaataaataactatactcactaagagaaaatttaatgtatcaaggata |
6505736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 7116 - 7254
Alignment:
| Q |
24 |
ttaattaccttcaaaccttttctttggcttccttactttcaaatagatgcatataaaaatgaagaccatagcaacaagagcaattggtactcctatagcg |
123 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||| | | ||||||||||| |||||||||||||||||| |||||| |||||||||||| |||| |||| |
|
|
| T |
7116 |
ttaattaccttcacacgttttctttggctttcttagtcttaaatagatgcagataaaaatgaagaccataacaacaatagcaattggtacccctagagcg |
7215 |
T |
|
| Q |
124 |
atgccaatggtagaaccataattgttgctttttcctgcacaa |
165 |
Q |
| |
|
|| || ||||||| || ||||||||||||||||||||| |
|
|
| T |
7216 |
atacctatggtagtac---tgttgttgctttttcctgcacaa |
7254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 13473 - 13581
Alignment:
| Q |
28 |
ttaccttcaaaccttttctttggcttccttactttcaaatagatgcatataaaaatgaagaccatagcaacaagagcaattggtactcctatagcgatgc |
127 |
Q |
| |
|
||||||||||||||||| | ||||| ||| ||| | | ||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
13473 |
ttaccttcaaaccttttatctggctccctcactcttatataaatgcagataaaaatgaagaccataagaacaagagcaattggtactcctacagcaatgc |
13572 |
T |
|
| Q |
128 |
caatggtag |
136 |
Q |
| |
|
|||| |||| |
|
|
| T |
13573 |
caatagtag |
13581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 7364 - 7415
Alignment:
| Q |
293 |
ttcaaattaaataactacacttaataagaggaaatttaatgtatcaaggata |
344 |
Q |
| |
|
|||||| |||||||||| ||| | |||||| ||||||||||||||||||||| |
|
|
| T |
7364 |
ttcaaaataaataactatactcactaagagaaaatttaatgtatcaaggata |
7415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University