View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20225_low_5 (Length: 407)
Name: NF20225_low_5
Description: NF20225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20225_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 389
Target Start/End: Original strand, 8946141 - 8946521
Alignment:
| Q |
9 |
ttattcttgatgtacgatttggtgatttctccatctattggactgataaagatgtttgcataacttaagtcttgaaaactatactcttcttttctaaaga |
108 |
Q |
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| T |
8946141 |
ttattcttgatgtatgatttggtgatttctccatctattggactaataaagatgtttgcataacttaagtcttgaaaactatactcttcttttctaaaga |
8946240 |
T |
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| Q |
109 |
agtcgaaatttgatatatttgatatgaaaacagctccaacaacgtttgctcgatacacattagtatattgttcaataatatctccatcgtcacaaaccac |
208 |
Q |
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| T |
8946241 |
aatcaaaatttgatatatttgatatgaaaacagctccaacaacgtttgcttgatacacataagaatattgttcaataatatctccatcgtcacaaaccac |
8946340 |
T |
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| Q |
209 |
aatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttcctagataattagac |
308 |
Q |
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| T |
8946341 |
aatattgttcttcactttgattaattctgtaacattgtcgcacaaacccatgaaaacaattggcaaattgctagcagagaaatttcctagataattagac |
8946440 |
T |
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| Q |
309 |
caacctgtgagtgagactccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtc |
389 |
Q |
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| T |
8946441 |
caacctgtgagtgagactccattaccaagtgtaagagtcgcatgaaattcacgatccatagtaccagcagcaacagttgtc |
8946521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 219 - 382
Target Start/End: Complemental strand, 8974135 - 8973972
Alignment:
| Q |
219 |
ttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttcctagataattagaccaacctgtga |
318 |
Q |
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| T |
8974135 |
ttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagaga |
8974036 |
T |
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| Q |
319 |
gtgagactccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaac |
382 |
Q |
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| T |
8974035 |
gtgagactccattaccaagtgtaagattcccacgaaactcacgatccaaagtacttgcagcaac |
8973972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 198 - 386
Target Start/End: Complemental strand, 8962760 - 8962572
Alignment:
| Q |
198 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttccta |
297 |
Q |
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| T |
8962760 |
tcacaaaccacaatctcgctcttcactctgattagttctgtaaaattgtcacacatacctttgaaaacaatgggaatattactagcagagaagtttccta |
8962661 |
T |
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| Q |
298 |
gataattagaccaacctgtgagtgagactccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagtt |
386 |
Q |
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| T |
8962660 |
tataggaagagaagccggtgagtgagactccattaccaagtgtaagattcccaaaaaattcacgatctaaagtactagcagcaacagtt |
8962572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 375
Target Start/End: Original strand, 9949680 - 9949857
Alignment:
| Q |
198 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttccta |
297 |
Q |
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| T |
9949680 |
tcacaaatcacaatttttctattcacattgtttaattctttaacattgtcacacatactcatgaaaacaattgaaaaatcgttagcagataaattttcta |
9949779 |
T |
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| Q |
298 |
gataattagaccaacctgtgagtgagactccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccag |
375 |
Q |
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| T |
9949780 |
aataggcagacaaactaacgagtgataattcattaccaagtgtaagcatcacacaaaattcacgatccaaagtaccag |
9949857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 198 - 386
Target Start/End: Original strand, 21687478 - 21687666
Alignment:
| Q |
198 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttccta |
297 |
Q |
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| T |
21687478 |
tcacaaaccacaatctttctcttcactgtgtttaattctttaacattgtcacacatacccataaaaacaattggaaaattgttagcagagaagtttccta |
21687577 |
T |
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| Q |
298 |
gataattagaccaacctgtgagtgagactccattaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagtt |
386 |
Q |
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| T |
21687578 |
gatagaaagacaaaccagtgagtgagactccattaccaagtgtaacagttcctaaaaattcacgatccaaagtaccagcagcaacagtt |
21687666 |
T |
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