View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20225_low_6 (Length: 323)
Name: NF20225_low_6
Description: NF20225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20225_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 44567257 - 44566953
Alignment:
| Q |
1 |
aaatgcaacaacagaatgataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgt |
100 |
Q |
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| T |
44567257 |
aaatgcaacaacagaatgataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgt |
44567158 |
T |
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| Q |
101 |
cccagcaattgtgtgaacattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaaccttctagaccaataccg |
200 |
Q |
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| T |
44567157 |
cccagcaattgtgtgaacattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaaccttctagaccaataccg |
44567058 |
T |
|
| Q |
201 |
cgacttagaaccccaggagttggaggtccagatgctgctaaaagtgaagaagtgtgatatgtgccaacctacaaggttaaaacaaatgaacctcaacaac |
300 |
Q |
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| T |
44567057 |
cgactaagaaccccaggagttggaggtccagatgctgctaaaagtgaagaagtgtgatatgtgccaacctacaaggttaaaacaaatgaacctcaacaac |
44566958 |
T |
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| Q |
301 |
aaagt |
305 |
Q |
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||||| |
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| T |
44566957 |
aaagt |
44566953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 36031503 - 36031769
Alignment:
| Q |
18 |
gataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgtcccagcaattgtgtgaa |
117 |
Q |
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| T |
36031503 |
gataatagatacttacccacgagagataacactatcagaatacatgcacccaattgaactgctctgcggcttcccattttagtcacagcaattgtatgaa |
36031602 |
T |
|
| Q |
118 |
cattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaaccttctagaccaataccgcgacttagaaccccagg |
217 |
Q |
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| T |
36031603 |
cattttcagttaaagtggtagatccagttccagtaccccagagaccagccaaaacactagaaagaccttccagaccaattccgcgactaagaaccccagg |
36031702 |
T |
|
| Q |
218 |
agttggaggtccagatgctgctaaaagtgaagaagtgtgatatgtgccaacctacaaggttaaaaca |
284 |
Q |
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| T |
36031703 |
agttggaggtctagatgctactaataatgaagatgcatgatatgagccaacctacaaagttaaaaca |
36031769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 20124273 - 20124129
Alignment:
| Q |
84 |
cggcttcccatttttgtcccagcaattgtgtgaacattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaac |
183 |
Q |
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|||||||||||||| ||| | |||||||| |||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||| | |||| ||| || |
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| T |
20124273 |
cggcttcccattttagtcacggcaattgtatgaacattttcggttaaagttgtagatccagttccagttccccagagaccagccaagacactacaaagac |
20124174 |
T |
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| Q |
184 |
cttctagaccaataccgcgacttagaaccccaggagttggaggtc |
228 |
Q |
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|||| | |||||| || ||||| ||||| |||||||||||||||| |
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| T |
20124173 |
cttccaaaccaattcctcgactaagaactccaggagttggaggtc |
20124129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 16069361 - 16069436
Alignment:
| Q |
2 |
aatgcaacaacagaatgataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaact |
77 |
Q |
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|||| ||||||| |||||||||||||||||| |||| |||||||||||| | |||||||| ||||| ||||||||| |
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| T |
16069361 |
aatgaaacaacaaaatgataatagatacttagcaaagagagataatactgtcagaagacatgcacctaattgaact |
16069436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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