View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20226_high_14 (Length: 435)
Name: NF20226_high_14
Description: NF20226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20226_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 230 - 431
Target Start/End: Complemental strand, 8910855 - 8910655
Alignment:
| Q |
230 |
tatgacatcacatgttcaaatgaaatcaaactcatttctatcttttctcctcgaatattcagtctctgaatttgactcttacgatgtgttgaggttttgc |
329 |
Q |
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| T |
8910855 |
tatgacatcacatgttcaaatgaaatcaaactcatttctatcttttctcctcgaatattcagtctctgaatttgactcttacgatgtgttgagcttttgc |
8910756 |
T |
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| Q |
330 |
aaagttctataacaactacatattaaaatactgccatgtatggcgttgaaattctagttttcattttttgttgtaaacaaaaattaatagtttgttactt |
429 |
Q |
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| T |
8910755 |
aaagttctataacaactacatattaaaatactgacatgtatggcgttgaaattctagttctca-tttttgttgtaaacaaaaattaatagtttgttactt |
8910657 |
T |
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| Q |
430 |
at |
431 |
Q |
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|| |
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| T |
8910656 |
at |
8910655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 8911256 - 8911117
Alignment:
| Q |
17 |
atcttccatttagcagcatagaggaggttctcttccgtgtttcagcattccaagtgtgttaatgttgttttttgctcgaactcattgacgtatgttcacc |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8911256 |
atcttccatttagcagcataggggaggttctcttccgtgtttcagcattccaagtgtgttaatgttgttttttgctcgaactcattgacgtatgttcacc |
8911157 |
T |
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| Q |
117 |
ggtttcaatacatgttattgagcatattctcttcaacttatg |
158 |
Q |
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| T |
8911156 |
agtttcaatacatgttattgagcatat--tcttcaacttatg |
8911117 |
T |
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